[galaxy-user] question about samtools in Galaxy

2013-10-02 Thread Robert Jackman
Hi, Can anyone tell me if the ability to randomly sample a sam or bam file (view -s) is available via Galaxy samtools? I can't find it but it might be an option that I am missing. sincerely, Robert Jackman rais...@gmail.com rjack...@bu.edu

Re: [galaxy-user] question about samtools in Galaxy

2013-10-02 Thread Jennifer Jackson
Hi Robert, This function is not wrapped into a tool yet by the dev team. I checked the Tool Shed as well and didn't see it there. But there is another option to get to the same result. The tool Text Manipulation - Select random lines from a file can be used with a SAM file. Don't not use