[galaxy-user] stderr on Samtools sort

Dear all, I'm trying to set up samtools sort command on local Galaxy server. But I can not success to get sorted files from its result. First time, I got error message from Galaxy as.. error at.. [bam_sort_core] merging from 13 files... To resolve this problem, I use discard_stderr_wrapper.sh

Re: [galaxy-user] stderr on Samtools sort

On Wed, Nov 14, 2012 at 9:00 AM, Masaki MS msmorioka-...@umin.ac.jp wrote: Dear all, I'm trying to set up samtools sort command on local Galaxy server. But I can not success to get sorted files from its result. I thought Galaxy tried to keep SAM/BAM files sorted by default... First time, I