[galaxy-user] cloud instance of galaxy

2012-05-24 Thread Randall, Thomas (NIH/NIEHS) [C]
I have put up an instance of galaxy on the cloud and as a simple test am trying to retrieve hg19 sequences corresponding to a bed file using the Extract Genomic DNA tool. hg19 is supposed to be a loaded, system installed build yet I get an error message stating that No sequences are available

[galaxy-user] How to control registration

2012-05-24 Thread Zeeshan Ali Shah
Hi, Is there any way to moderate Registration on Galaxy portal ? We are setting up a cluster for internal users but it seems that by default registration is open for all. Can any way we disable the registration and Moderator create users separately ? OR Moderate the registration process ?

Re: [galaxy-user] How to control registration

2012-05-24 Thread Roman Valls Guimera
Zeeshan, AFAIK the only settings you can set regarding this are in universe_wsgi.ini through the directives: # Allow unregistered users to create new accounts (otherwise, they will have to # be created by an admin). allow_user_creation = True # Email administrators when a new user account is

Re: [galaxy-user] How to transfer files between two galaxy instances

2012-05-24 Thread Jennifer Jackson
Hi again, I have an important update - I was incorrect about workflow transfer between Galaxy instances and where to edit. In summary, it is important to do the workflow editing up-front before the export, instead of after import. I'll explain why. While it is now possible to import

Re: [galaxy-user] cloud instance of galaxy

2012-05-24 Thread Dave Clements
Hi Tom, The cloud image has the reference data for hg19 and mm9. However, it does not come with fully configured loc files for every tool that takes advantage of all that preloaded data. Try updating the loc file for the Extract Genomic DNA tool. Dave C. On Wed, May 23, 2012 at 11:07 AM,

Re: [galaxy-user] cloud instance of galaxy

2012-05-24 Thread Dave Clements
Hi Tom, An update from the CloudMan developers: This will be fixed in the next release, which is imminent. Thanks, Dave C. On Thu, May 24, 2012 at 11:04 AM, Dave Clements cleme...@galaxyproject.orgwrote: Hi Tom, The cloud image has the reference data for hg19 and mm9. However, it does

Re: [galaxy-user] How to transfer files between two galaxy instances

2012-05-24 Thread shamsher jagat
Thanks Jen for the update. I tried following: Go to Ratsch Galaxy instance workflow make work flow accessible via link Go to galaxy Penn server Workflow import workflow URL galaxy UR error is The data content does not appear to be a Galaxy workflow. Exception: No JSON object could be decoded:

Re: [galaxy-user] Runtime on public Galaxy and current version of Galaxy on the Cloud?

2012-05-24 Thread Diana Cox-Foster
Hi, I need some guidance on how to upload data files onto an instance of Galaxy on the Cloud. I have successfully established the instance, but am unable to ftp data sets into it.I have tried using my logon password for the instance to be able to gain access, without success. Is there a