[galaxy-user] gft annotation files

2013-06-27 Thread Vijay Kumar
Dear sir, any one suggest me where i download reference annotation gft files for zebra finch . i tried ucsc site, but i donot know exact place to get gft files. thank u sir.. ___ The Galaxy User list should be used for the discussion

Re: [galaxy-user] gft annotation files

2013-06-27 Thread Jennifer Jackson
Hello, The UCSC Table browser can be used to extract a GTF file formatted dataset. See the tool Get Data - UCSC Main. The output format is one of the choices at the bottom of the tool UCSC form and there is a user guide below that at the UCSC web site that details how-to for queries. Best,

Re: [galaxy-user] Pause function please

2013-06-27 Thread Jennifer Jackson
Hi Ann, A pause function that truly stops an alignment job, permits inspection of intermediate results, then resumes it, is probably not going to be implemented. But we'll send more feedback about that if I have it incorrect. The best advice I have to consider running a smaller sample of

[galaxy-user] Problem with ftp server?

2013-06-27 Thread Katrien M. Devos
I successfully uploaded files to the main Galaxy server this morning using ftp. However, any attempts to upload files since around noon have failed. I get a 'Could not connect to server' error when trying to connect to main.g2.bx.psu.edu uisng FileZilla. Any suggestions? Thank you. Katrien --