[galaxy-user] Galaxy (and GMOD) at PAG 2011, Jan 15-19

2011-01-08 Thread Dave Clements
that to the list as well. Thanks, Dave C -- Forwarded message -- From: Dave Clements cleme...@nescent.org Date: Sat, Jan 8, 2011 at 9:32 PM Subject: [Gmod-announce] GMOD at PAG 2011, Jan 15-19 To: GMOD Announcements List gmod-annou...@lists.sourceforge.net, GMOD Comparative

Re: [galaxy-user] [galaxy-dev] 2011 Galaxy Community Conference, May 25-26, Lunteren, The Netherlands

2011-02-07 Thread Dave Clements
, Feb 2, 2011 at 5:19 AM, Dave Clements clementsgal...@gmail.com wrote: Hello all, We are pleased to announce the 2011 Galaxy Community Conference, being held May 25-26 in Lunteren, The Netherlands. The meeting will feature two full days of presentations and discussion on extending Galaxy

Re: [galaxy-user] [galaxy-dev] 2011 Galaxy Community Conference, May 25-26, Lunteren, The Netherlands

2011-02-08 Thread Dave Clements
beers in De Onderwereld! :)) Cheers, Pi On Feb 7, 2011, at 7:23 PM, Dave Clements wrote: Hi Peter, I believe that your suggested travel plan is indeed the best. However, I'll confirm this with the NBIC folks and post the information here and to the web page, probably tomorrow

[galaxy-user] March 2011 GMOD Meeting early registration closes this Friday

2011-02-14 Thread Dave Clements
logistics are on the GMOD Americas 2011 page. This meeting, and all GMOD Americas 2011 events, are jointly sponsored by NESCent and the Galaxy Project. Hope to see you in North Carolina! Dave Clements Galaxy Project PS: And I hope to see you in the Netherlands as well! *The abstract submission

Re: [galaxy-user] 2011 Galaxy Community Conference, May 25-26, Lunteren, The Netherlands

2011-02-22 Thread Dave Clements
: http://gmod.org/wiki/March_2011_GMOD_Meeting On Tue, Feb 1, 2011 at 9:19 PM, Dave Clements clementsgal...@gmail.comwrote: Hello all, We are pleased to announce the *2011 Galaxy Community Conference*, being held *May 25-26 in Lunteren, The Netherlands*. The meeting will feature two full days

Re: [galaxy-user] irc channel for galaxy

2011-03-09 Thread Dave Clements
Hi George, Thanks to your suggestion and work by Nate Coraor, Galaxy now has an IRC channel: Server: irc.freenode.net Channel: #galaxyproject This is an informal online gathering place for the Galaxy community to post questions and help each other out. Note that while IRC is conducive

[galaxy-user] Around Pittsburgh on April 6? Attend the Intro to Galaxy Sessions @ Pitt

2011-03-31 Thread Dave Clements
Hello all, Dan Blankenberg will be giving two workshops on Galaxy at the University of Pittsburgh on April 6. The presentations are open to the public. See below for details and please contact Dan, or Carrie Iwema at Pitt, if you have any questions. Thanks, Dave C. Intro to Galaxy

Re: [galaxy-user] Around Pittsburgh on April 6? Attend the Intro to Galaxy Sessions @ Pitt

2011-04-01 Thread Dave Clements
*To:* Dave Clements; Galaxy Dev List; Galaxy User List *Cc:* Carrie Iwema; Dan Blankenberg *Subject:* Re: [galaxy-user] Around Pittsburgh on April 6? Attend the Intro to Galaxy Sessions @ Pitt Hi Will this we available as a webiner or webcast for us who are located out side of Penn state

Re: [galaxy-user] 2011 Galaxy Community Conference, May 25-26, Lunteren, The Netherlands

2011-04-11 Thread Dave Clements
speakers. More will be added in the coming weeks as the schedule firms up. http://galaxy.psu.edu/gcc2011/Programme.html Please let me know if you have any questions, and hope to see you in May, Dave C. On Tue, Feb 1, 2011 at 9:19 PM, Dave Clements clementsgal...@gmail.comwrote: Hello all, We

Re: [galaxy-user] too many list digests

2011-04-14 Thread Dave Clements
Hi Olen, Yury, and all other digesters, I've bounced the threshold for new digests up from 30KB to 300KB. Mailman will still send out a digest at the end of the day, even if that threshold is not hit. Thanks for pointing this out. Dave C. On Thu, Apr 14, 2011 at 2:08 PM, Olen Vance Sluder Jr

Re: [galaxy-user] unsubscribe

2011-04-15 Thread Dave Clements
Hello all, We are looking into this. Look for more information later today. Thanks for pointing this out, Dave C On Fri, Apr 15, 2011 at 9:28 AM, David C. Schwartz, Ph.D. dcschwa...@facstaff.wisc.edu wrote: Agreed—I'm also having the same issues! David Schwartz From: Yi Yin

[galaxy-user] Galaxy Community Conference Early Registration Deadline extended to May 1

2011-04-22 Thread Dave Clements
Hello all, The early registration deadline for the 2011 Galaxy Community Conference has been extended by a week, from April 24 to May 1. The conference is being held in Lunteren, the Netherlands, 25-26 May, with a special Introduction to Galaxy session on the evening of May 24. That's the good

Re: [galaxy-user] Galaxy Community Conference Early Registration Deadline extended to May 1

2011-04-26 Thread Dave Clements
will be full.* * Thank you all for your patience while we worked on this. I apologize for and regret any inconvenience this has caused. As always, please let me know if you have any questions. Thanks, Dave C On Thu, Apr 21, 2011 at 11:12 PM, Dave Clements cleme...@galaxyproject.orgwrote: Hello

[galaxy-user] Galaxy Workshops @ USC June 23-24

2011-06-17 Thread Dave Clements
Hello all, There will be two Galaxy workshops at the University of Southern California (USC) next week. Both are presented by Jeremy Goecks of Emory University and the Galaxy team. *Both workshops are open to the public:* *Galaxy: A web‐based workbench for interactive and reproducible analysis

[galaxy-user] Galaxy Has a New Wiki

2011-07-08 Thread Dave Clements
Hello all, It is my pleasure to announce that Galaxy has a new wiki: http://galaxyproject.org/wiki. This wiki contains all the content from the old bitbucket wiki, plus a bunch of new content (most of which is still work in progress). The new wiki is based on MoinMoin and includes several new

[galaxy-user] Galaxy @ ISMB/ECCB, 3DSIG, and BOSC

2011-07-12 Thread Dave Clements
Hello all, Galaxy will have a large presence at ISMB/ECCB, 3DSIG, and BOSC, all of which start this week in Vienna. Galaxy related content includes (at least): 1 Galaxy organized workshop on Genomics for Non-Model Organisms featuring 4 talks, 7 additional talks at ISMB/ECCB and BOSC, and 3

[galaxy-user] Galaxy Events Page and Google Calendar

2011-07-13 Thread Dave Clements
Hello all, The new Galaxy wiki includes a Galaxy Eventshttp://wiki.g2.bx.psu.edu/Eventspage ( http://wiki.g2.bx.psu.edu/Events) that lists upcoming events (such as ISMB/ECCB 2011 http://wiki.g2.bx.psu.edu/Events/ISMB-ECCB-BOSC%202011 and the Workshop on Comparative

[galaxy-user] Galaxy News Page and RSS Feed

2011-07-28 Thread Dave Clements
Hello all, The new Galaxy wiki features a Galaxy News page and RSS feed for items of interest to the Galaxy community. The news page is a good way to get information out to the community and is less intrusive than posting to the Galaxy mailing lists. Anyone can create a news items by following

[galaxy-user] Toronto GMOD meeting registration now open

2011-08-12 Thread Dave Clements
Hello all, The next GMOD meeting has been schedule for this October in Toronto. See below for details. Dave C -- Forwarded message -- From: Scott Cain sc...@scottcain.net Date: Fri, Aug 12, 2011 at 9:23 AM Subject: [Gmod-announce] Toronto GMOD meeting registration now open

[galaxy-user] Galaxy is Hiring

2011-08-29 Thread Dave Clements
Hello all The Galaxy Project is growing and has open positions in both the Penn State and Emory groups (http://wiki.g2.bx.psu.edu/News/Galaxy%20is%20Hiring). *Penn State: System administrators/analysts* The Nekrutenko Lab http://www.bx.psu.edu/%7Eanton/ at the Huck Institutes of Life Sciences

Re: [galaxy-user] Galaxy Architecture Documentation

2011-09-20 Thread Dave Clements
Hi Oren, This book chapter http://userwww.service.emory.edu/~eafgan/content/Galaxy_eScienceGateway.pdf, includes a high-level overview of Galaxy. (Note: that chapter will be copied to the wiki soon.) There is some API documentation. ~/scripts/api/README, ~/scripts/api/workflow_ execute.py and

Re: [galaxy-user] Galaxy Architecture Documentation

2011-09-21 Thread Dave Clements
? Thanks! Oren On 9/20/2011 12:21 PM, Dave Clements wrote: Hi Oren, This book chapter http://userwww.service.emory.edu/~eafgan/content/Galaxy_eScienceGateway.pdf, includes a high-level overview of Galaxy. (Note: that chapter will be copied to the wiki soon.) There is some API documentation

[galaxy-user] Upcoming Galaxy Events

2011-10-31 Thread Dave Clements
-krumlov/ Features Galaxy and much more. *Application deadline is November 1.* Český Krumlov, Czech Republic James Taylor http://wiki.g2.bx.psu.edu/JamesTaylor January 14-18 2012 Galaxy Session @ GMOD Workshop PAG 2012 http://www.intlpag.org/, San Diego, California, United States Dave Clements

[galaxy-user] Save These Dates! July 25-27: Galaxy Community Conference

2011-11-15 Thread Dave Clements
submission and registration deadlines will be announced in the coming months. Please reserve July 25-27 on your calendar now, and hope to see you in Chicago next summer! Dave Clements PS: If your curious to know what goes on at a Galaxy meeting, see the GCC2011 page for an idea: http

[galaxy-user] Galaxy-Announce: A new, moderated, low-volume Galaxy Mailing List

2011-12-02 Thread Dave Clements
Hello all, There is a new mailing list in the Galaxy: Galaxy-Announce. Galaxy-Announce is a *moderated, low-volume *mailing list. Galaxy-Announce complements the existing Galaxy-User (about the public server at UseGalaxy.org) and Galaxy-Dev (deployment and development) mailing lists. However,

Re: [galaxy-user] problems loading galaxy histories

2011-12-05 Thread Dave Clements
Hi Gretel, I just read the rest of my inbox. It appears that you are not the only person experiencing problems with the history panel today. Someone from Galaxy will get back to you once we have this figured out. Thanks, Dave C. On Mon, Dec 5, 2011 at 8:44 AM, Dave Clements cleme

[galaxy-user] January 2012 Galaxy Events: Dec 15 Deadline for Czech Republic Workshop

2011-12-08 Thread Dave Clements
/xx/webprogrampreliminary/Paper4623.html@ Cloud Computing Sessionhttp://pag.confex.com/pag/xx/webprogrampreliminary/Session1139.html * PAG 2012 http://wiki.g2.bx.psu.edu/Events/PAG2012, San Diego, California, United States Dave Clements http://wiki.g2.bx.psu.edu/DaveClements Dannon Baker January

[galaxy-user] Looking for Galaxy related papers (or have written one)? There is a new Galaxy Group @ CiteULike

2011-12-14 Thread Dave Clements
://www.citeulike.org/group/16008/order/group_rating - Galaxy Group list of papers Thanks, Dave Clements PS: To cite the Galaxy Project, see http://galaxyproject.org/wiki/Citing%20Galaxy. -- http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ http://galaxyproject.org/wiki

[galaxy-user] Search the Galaxy!

2011-12-20 Thread Dave Clements
#Searching. We strongly encourage you to give these try. Please send feedback and suggestions to Galaxy Outreach outre...@galaxyproject.org. Happy searching (and a Happy New Year!), Dave Clements -- http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ http://galaxyproject.org/wiki

[galaxy-user] Galaxy @ PAG 2012

2012-01-06 Thread Dave Clements
, and on deploying Galaxy in the cloud, and talks and posters on using Galaxy and several local Galaxy deployments. See the Galaxy @ PAG2012 page (http://wiki.g2.bx.psu.edu/Events/PAG2012) and the conference website (http://www.intlpag.org/) for more information. Dannon Baker and Dave Clements from the Galaxy Team

[galaxy-user] February 2012 Galaxy Update

2012-01-31 Thread Dave Clements
Sponsorshttp://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_02#GCC2012_Sponsors - New Distributionshttp://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_02#New_Distributions If you have anything you would like to see in the March *Galaxy Update*, please let me know. Dave Clements Link: http

[galaxy-user] 2012 Galaxy Community Conference (GCC2012): Now Accepting Abstracts

2012-02-13 Thread Dave Clements
Institute http://www.ci.anl.gov/. Links: http://galaxyproject.org/GCC2012 http://galaxyproject.org/wiki/Events/GCC2012/Abstracts Thanks, Dave Clements -- http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ http://galaxyproject.org/wiki

[galaxy-user] March 2012 Galaxy Update

2012-02-29 Thread Dave Clements
Hello all, The March 2012 Galaxy Updatehttp://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_02is now available. *Galaxy Update http://wiki.g2.bx.psu.edu/GalaxyUpdates* is a (mostly) monthly summary of what is going on in the Galaxy community. *Galaxy Updates * complements the *Galaxy Development News

Re: [galaxy-user] Training on NGS data analysis

2012-04-02 Thread Dave Clements
Hi Aarti, The short answer to your question is no. We do provide training on how to use Galaxy to do bioinformatic analysis. See the Events page (http://wiki.g2.bx.psu.edu/Events) for what's coming up. We don't offer training on NGS analysis per se. That is a very complex subject and we

Re: [galaxy-user] GCC2012 Abstract Submission Deadline is April 16, one week from today.

2012-04-16 Thread Dave Clements
Hello all, Just a reminder that the abstract submission deadline for the 2012 Galaxy Community Conference (GCC2012) is TODAY. See http://wiki.g2.bx.psu.edu/Events/GCC2012/Abstracts for details. Thanks, Dave C On Mon, Apr 9, 2012 at 2:03 PM, Dave Clements cleme...@galaxyproject.orgwrote

[galaxy-user] May 2012 Galaxy Update

2012-05-01 Thread Dave Clements
/2012_05#Tool_Shed_Contributions As always, if you have anything you would like to see in the June *Galaxy Update http://wiki.g2.bx.psu.edu/GalaxyUpdates*, please let me know. Thanks, Dave Clements -- http://galaxyproject.org/GCC2012 http://galaxyproject.org/wiki/GCC2012 http://galaxyproject.org

Re: [galaxy-user] GCC2012 Update

2012-05-14 Thread Dave Clements
for the duplicate emails, Dave C. On Mon, May 14, 2012 at 1:13 PM, Dave Clements cleme...@galaxyproject.orgwrote: Hello all, The 2012 Galaxy Community Conference (GCC2012), being held in Chicago, Illinois, July 25-27, is *now just 10 weeks away*. We have updates on: 1. Help set the topics covered

Re: [galaxy-user] cloud instance of galaxy

2012-05-24 Thread Dave Clements
Hi Tom, The cloud image has the reference data for hg19 and mm9. However, it does not come with fully configured loc files for every tool that takes advantage of all that preloaded data. Try updating the loc file for the Extract Genomic DNA tool. Dave C. On Wed, May 23, 2012 at 11:07 AM,

Re: [galaxy-user] cloud instance of galaxy

2012-05-24 Thread Dave Clements
Hi Tom, An update from the CloudMan developers: This will be fixed in the next release, which is imminent. Thanks, Dave C. On Thu, May 24, 2012 at 11:04 AM, Dave Clements cleme...@galaxyproject.orgwrote: Hi Tom, The cloud image has the reference data for hg19 and mm9. However, it does

[galaxy-user] GCC2012 Early Registration ENDS THIS MONDAY JUNE 11

2012-06-10 Thread Dave Clements
. See you in Chicago! Dave Clements, on behalf of the GCC2012 Organizing Committeehttp://galaxyproject.org/wiki/Events/GCC2012/Organizing%20Committee Links: http://galaxyproject.org/GCC2012 http://galaxyproject.org/wiki/GCC2012 http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ http

[galaxy-user] July 2012 Galaxy Update

2012-06-28 Thread Dave Clements
would like to see in the August *Galaxy Updatehttp://wiki.g2.bx.psu.edu/GalaxyUpdates *, please let me know. Thanks, Dave Clements -- http://galaxyproject.org/GCC2012 http://galaxyproject.org/wiki/GCC2012 http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ http

[galaxy-user] August 2012 Galaxy Update

2012-07-31 Thread Dave Clements
/2012_08#New_Distributions - Other News http://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_08#Other_News If you have anything you would like to see in the September *Galaxy Updatehttp://wiki.g2.bx.psu.edu/GalaxyUpdates *, please let me know. Thanks Dave Clements -- http://galaxyproject.org/wiki

Re: [galaxy-user] Is there web-based CummeRbund?

2012-08-25 Thread Dave Clements
Hi Jianguang, I went to http://galaxy.psu.edu/search/web/ and searched for cummerbund. It looks like there is a cummerbund wrapper in the test Galaxy Tool Shed, but that is about it. Dave C On Fri, Aug 24, 2012 at 3:23 PM, Du, Jianguang jia...@iupui.edu wrote: Dear All, I am going to

[galaxy-user] Galaxy-France -- Communauté française de Galaxy (French Galaxy Community)

2012-08-27 Thread Dave Clements
Galaxy, Rejoignez nous en vous inscrivant à http://lists.bx.psu.edu/listinfo/galaxy-france Les archives de cette liste sont disponibles à http://france.list.galaxyproject.org A très bientôt sur la liste Galaxy France, Les administrateurs: Alban Lermine, Olivier Inizan, Rémi Marenco, Dave Clements

[galaxy-user] September 2012 Galaxy Update

2012-08-29 Thread Dave Clements
- Other News http://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_09#Other_News If you have anything you would like to see in the October *Galaxy Updatehttp://wiki.g2.bx.psu.edu/GalaxyUpdates *, please let me know. Thanks, Dave Clements -- http://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_09 http

[galaxy-user] October 2012 Galaxy Update

2012-10-01 Thread Dave Clements
://wiki.g2.bx.psu.edu/GalaxyUpdates *, please let me know. Thanks, Dave Clements -- http://galaxyproject.org/wiki/GCC2012http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ http://galaxyproject.org/wiki/ ___ The Galaxy User

[galaxy-user] November 2012 Galaxy Update

2012-10-31 Thread Dave Clements
have anything you would like to see in the December *Galaxy Updatehttp://wiki.g2.bx.psu.edu/GalaxyUpdates *, please let us know. Dave Clements and the Galaxy Team http://wiki.g2.bx.psu.edu/GalaxyTeam -- http://galaxyproject.org/wiki/GCC2012http://galaxyproject.org/ http://getgalaxy.org/ http

[galaxy-user] December 2012 Galaxy Update

2012-11-30 Thread Dave Clements
/GalaxyUpdates/2012_12#Other_News If you have anything you would like to see in the January *Galaxy Updatehttp://wiki.galaxyproject.org/GalaxyUpdates *, please let us know. Thanks, Dave Clements and the Galaxy Team http://wiki.galaxyproject.org/GalaxyTeam -- http://galaxyproject.org/wiki/GCC2012http

Re: [galaxy-user] Analysis in queue but not running

2012-11-30 Thread Dave Clements
Hi Lew, CC'ing the galaxy-user list because I am assuming that your question is about the free public server (Main) @ usegalaxy.org / main.g2.bx.psu.edu. If you have any future questions about Main, please post them to Galaxy-User so that others can see the question and respond. If I am reading

Re: [galaxy-user] User stats

2012-12-07 Thread Dave Clements
Nicholas, General project statistics are published at http://wiki.galaxyproject.org/Galaxy%20Project/Statistics. We update most of those numbers every 6 months and they were last updated in July. I'll see what I can find about the number of case.edu users. Look for a private email later today.

[galaxy-user] January 2013 Galaxy Update

2013-01-02 Thread Dave Clements
, Dave Clements and the Galaxy Team -- http://galaxyproject.org/wiki/GCC2012http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ http://wiki.galaxyproject.org/ ___ The Galaxy User list should be used for the discussion of Galaxy

Re: [galaxy-user] spot EC2 instances for Galaxy?

2013-01-18 Thread Dave Clements
Hello all, If you are interested, this was discussed on the Galaxy-Dev list: http://dev.list.galaxyproject.org/galaxy-using-EC2-spot-pricing-td4657877.html Dave C On Tue, Jan 15, 2013 at 5:35 PM, Andrew Norman anorma...@gmail.com wrote: Hi I'm wondering if anyone has had experience running

Re: [galaxy-user] Upload files not working?

2013-01-18 Thread Dave Clements
Hi Daniel, Yes, there was a problem yesterday with importing data on the public server. The problem was identified and fixed late yesterday. Thanks for reporting this, and please let us know if this problem reoccurs. Thanks, Dave C On Thu, Jan 17, 2013 at 6:09 AM, Daniel Sher

[galaxy-user] February 2013 Galaxy Update

2013-02-01 Thread Dave Clements
#Other_News If you have anything you would like to see in the March *Galaxy Updatehttp://wiki.galaxyproject.org/GalaxyUpdates *, please let us know. Thanks, Dave Clements http://wiki.galaxyproject.org/DaveClements and the Galaxy Team http://wiki.galaxyproject.org/GalaxyTeam -- http

[galaxy-user] 2013 Galaxy Community Conference (GCC2013) Registration and Abstract Submission are Now Open

2013-02-24 Thread Dave Clements
Dear Galaxy Community, We are pleased to announce that early registrationhttp://wiki.galaxyproject.org/Events/GCC2013/Register and paper and poster abstract submissionhttp://wiki.galaxyproject.org/Events/GCC2013/Abstracts are now open for the 2013 Galaxy Community Conference

[galaxy-user] March 2013 Galaxy Update

2013-02-28 Thread Dave Clements
Hello all, The March 2013 Galaxy Update is now availablehttp://wiki.galaxyproject.org/GalaxyUpdates/2013_03. See http://wiki.galaxyproject.org/GalaxyUpdates/2013_03. *Highlights include:* - *GCC2013 http://wiki.galaxyproject.org/GalaxyUpdates/2013_03#GCC2013 early registration

[galaxy-user] GCC2013 Oral Presentation Abstract Submission Closes 12 April

2013-04-01 Thread Dave Clements
, 2013 at 7:40 PM, Dave Clements cleme...@galaxyproject.orgwrote: Dear Galaxy Community, We are pleased to announce that early registrationhttp://wiki.galaxyproject.org/Events/GCC2013/Register and paper and poster abstract submissionhttp://wiki.galaxyproject.org/Events/GCC2013/Abstracts

[galaxy-user] April 2013 Galaxy Update

2013-04-01 Thread Dave Clements
. Dave Clements and the Galaxy Team http://wiki.galaxyproject.org/GalaxyTeam -- http://galaxyproject.org/GCC2013 http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ http://wiki.galaxyproject.org/ ___ The Galaxy User list should

[galaxy-user] Call for papers for a special GCC2013 and Galaxy series in GigaScience

2013-04-04 Thread Dave Clements
Hello all, I am pleased to inform you that talks presented at the 2013 Galaxy Community conference will be eligible for consideration to be published in the journal *GigaScience* and that BGI will generously cover the article processing fees for these articles. See the announcement below for

[galaxy-user] GCC2013 Talk Abstract Submission closes this Friday

2013-04-09 Thread Dave Clements
the article processing fees for these articles. See the announcement http://wiki.galaxyproject.org/News/GigaScienceGalaxyCFPfor details. Thanks, Dave C On Mon, Feb 25, 2013 at 3:40 AM, Dave Clements cleme...@galaxyproject.orgwrote: Dear Galaxy Community, We are pleased to announce that early

[galaxy-user] Fwd: [Gmod-announce] 2013 GMOD Summer School: Apply now!

2013-04-17 Thread Dave Clements
Hello all, The 2013 GMOD Summer School is now accepting applications. Galaxy will again be included in the topics covered. And Amelia says: Applications are competitive, so we encourage you to apply well before the deadline, June 10th. So, if you are interested, act soon. Dave C

Re: [galaxy-user] [galaxy-dev] Teaching using Galaxy

2013-04-24 Thread Dave Clements
Hi David, Using Galaxy to teach undergraduates is a long term interest of mine. Which, unfortunately, does not mean I have yet put a lot of thought into it. However, lack of thought hasn't stopped me yet. First, this topic was discussed in a breakout at last year's GCC:

Re: [galaxy-user] [galaxy-dev] Teaching using Galaxy

2013-04-24 Thread Dave Clements
is another issue, but this is not the topic of this email... I'll have a better look at how I could use published histories and workflows... Thanks, DJ 2013/4/24 Dave Clements cleme...@galaxyproject.org Hi David, Using Galaxy to teach undergraduates is a long term interest of mine

[galaxy-user] May 2013 Galaxy Update

2013-05-06 Thread Dave Clements
/2013_05#Other_News If you have anything you would like to see in the June *Galaxy Updatehttp://wiki.galaxyproject.org/GalaxyUpdates *, please let us know. Dave Clements and the Galaxy Team http://wiki.galaxyproject.org/GalaxyTeam -- http://galaxyproject.org/GCC2013 http://galaxyproject.org/ http

[galaxy-user] Duplicate Accounts on Main

2013-05-15 Thread Dave Clements
Hello all, The terms of use https://main.g2.bx.psu.edu/static/terms.html for the Galaxy Project's free Galaxy server, http://usegalaxy.org (a.k.a. Mainhttp://wiki.galaxyproject.org/Main) specify Your access to the Service is provided under the condition that you abide by any published quotas on

Re: [galaxy-user] Duplicate Accounts on Main

2013-05-17 Thread Dave Clements
team feedback for duplicate accounts at usegalaxy.orgpending. bit.ly/17wIicD #usegalaxy http://twitter.com/search?q=%23usegalaxy On Wed, May 15, 2013 at 4:39 PM, Dave Clements cleme...@galaxyproject.orgwrote: Hello all, The terms of use https://main.g2.bx.psu.edu/static/terms.html

[galaxy-user] June 2013 Galaxy Update

2013-05-31 Thread Dave Clements
. Dave Clements and the Galaxy Team http://wiki.galaxyproject.org/GalaxyTeam -- http://galaxyproject.org/GCC2013 http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ http://wiki.galaxyproject.org/ ___ The Galaxy User list should

Re: [galaxy-user] [galaxy-dev] Information for Galaxy Event Horizon

2013-06-03 Thread Dave Clements
Hi Sarah, We'd be happy to put this on the Galaxy Event Horizon page on the wiki. Since the event is over, we would list it in the past events section. Is there a web page for the workshop or slides that we can link to? And, for future reference, wiki update requests can be sent directly to

Re: [galaxy-user] Newbie: summary or metrics of Galaxy use adoption?

2013-06-03 Thread Dave Clements
Hi Ramon, The Galaxy Project does not track local installs directly. We don't even keep track of the number of times it is downloaded. However, you can get an approximate feel for how widely used it is in a couple of other ways: - Galaxy-Dev mailing list traffic and membership. Most

[galaxy-user] GCC2013 Regular Registration closes June 14

2013-06-04 Thread Dave Clements
Hello all, This is a reminder that registrationhttp://wiki.galaxyproject.org/Events/GCC2013/Registerfor the 2013 Galaxy Community Conference (GCC2013http://wiki.galaxyproject.org/Events/GCC2013) closes June 14*, just ten days from today. *Registering

[galaxy-user] (no subject)

2013-06-29 Thread Dave Clements
Contributionshttp://wiki.galaxyproject.org/GalaxyUpdates/2013_07#Tool_Shed_Contributions - Other Newshttp://wiki.galaxyproject.org/GalaxyUpdates/2013_07#Other_News If you have anything you would like to see in the August *Galaxy Updatehttp://wiki.galaxyproject.org/GalaxyUpdates *, please let us know. Dave

Re: [galaxy-user] Significant in Cuffdiff's ouput

2013-07-22 Thread Dave Clements
Hi Thanh, This is a question about Cuffdiff, rather than about Galaxy directly. Try posting the question to one of these forums: https://groups.google.com/forum/#!forum/tuxedo-tools-users http://seqanswers.com/forums/forumdisplay.php?f=18 - Bioinformatics forum

[galaxy-user] August 2013 Galaxy Update Newsletter is out

2013-07-31 Thread Dave Clements
://wiki.galaxyproject.org/GalaxyUpdates/2013_08#Other_News If you have anything you would like to see in the next *Galaxy Updatehttp://wiki.galaxyproject.org/GalaxyUpdates *, please let us know. Dave Clements and the Galaxy Team http://wiki.galaxyproject.org/GalaxyTeam -- http://galaxyproject.org/GCC2013 http

[galaxy-user] 2014 Galaxy Training Survey

2013-08-05 Thread Dave Clements
Hello all, The Galaxy Project is asking for your help on how we should focus our training efforts for the coming year. If you are interested in Galaxy Training, please take a few minutes to let us know what you would like to see offered, and where you would like training to be held:

Re: [galaxy-user] Very very slow response when a class is using Galaxy from a computer room in the university

2013-08-21 Thread Dave Clements
Dear Ido, The load on the Galaxy project public server (main, aka usegalaxy.org) is often heavy and it's unpredictable when that will happen. As such teaching using main is not, um, recommended. About 18 months ago, the Galaxy project switched from using main for workshops to using cloud-based

[galaxy-user] August 2013 Galaxy Update Newsletter is out

2013-08-30 Thread Dave Clements
://wiki.galaxyproject.org/GalaxyUpdates/2013_09#Tool_Shed_Contributions - Other Newshttp://wiki.galaxyproject.org/GalaxyUpdates/2013_09#Other_News If you have anything you would like to see in the next *Galaxy Updatehttp://wiki.galaxyproject.org/GalaxyUpdates *, please let us know. Dave Clements

[galaxy-user] Please save these dates! GCC2014: June 30 - July 2

2013-10-02 Thread Dave Clements
Hello all, The 2014 Galaxy Community Conference (GCC2014)http://wiki.galaxyproject.org/Events/GCC2014 has been scheduled for June 30 through July 2, at the Homewood Campushttp://webapps.jhu.edu/jhuniverse/information_about_hopkins/campuses/homewood_campus/ of Johns Hopkins University

[galaxy-user] December 2013 Galaxy Update

2013-12-01 Thread Dave Clements
anything you would like to see in the next *Galaxy Update http://wiki.galaxyproject.org/GalaxyUpdates*, please let us know. Thanks for an excellent year, Dave Clements and the Galaxy Team http://wiki.galaxyproject.org/GalaxyTeam -- http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org

[galaxy-user] GCC2014 Training Day: Topic Nomination is now open

2013-12-02 Thread Dave Clements
Hello all, Training Day topics are nominated by you http://bit.ly/gcc2014tdnom, the Galaxy Community. Please take a minute to nominate a topic. Any topic of interest to the Galaxy Community can be nominated and you are encouraged to nominate more than one topic. If you are looking for ideas, see

Re: [galaxy-user] GCC2014 Training Day: Topic Nomination is now open

2013-12-18 Thread Dave Clements
http://bit.ly/gcc2014tdnom before the end of this Friday.* Thanks, Dave C, on behalf of the GCC2014 Organizing Committee On Mon, Dec 2, 2013 at 10:32 AM, Dave Clements cleme...@galaxyproject.orgwrote: Hello all, Training Day topics are nominated by you http://bit.ly/gcc2014tdnom, the Galaxy

[galaxy-user] January 2014 Galaxy Update Newsletter

2013-12-31 Thread Dave Clements
If you have anything you would like to see in the next *Galaxy Update https://wiki.galaxyproject.org/GalaxyUpdates*, please let us know. Best wishes to you and yours for a happy and spectacular 2014, Dave Clements and the Galaxy Teamhttps://wiki.galaxyproject.org/GalaxyTeam -- http

[galaxy-user] GCC2014 Training Day Topic Voting open January 6-17

2014-01-06 Thread Dave Clements
Hello all, What topics should be offered at the GCC2014 Training Dayhttps://wiki.galaxyproject.org/Events/GCC2014/TrainingDay ? Topics https://wiki.galaxyproject.org/Events/GCC2014/TrainingDay for the GCC2014 Training Day https://wiki.galaxyproject.org/Events/GCC2014/TrainingDay are selected by

[galaxy-user] Galaxy Australasia Workshop (GAW 2014), 24-25 March, Melbourne

2014-01-17 Thread Dave Clements
Hello all, *We are pleased to announce the 1st Galaxy Australasia Workshop 2014 (GAW 2014) https://wiki.galaxyproject.org/Events/GAW2014 will be held in Melbourne, Australia on 24 and 25th March 2014.* The Galaxy Australasia Workshophttps://wiki.galaxyproject.org/Events/GAW2014 is a great

[galaxy-user] February 2014 Galaxy Update Newsletter

2014-01-31 Thread Dave Clements
to see in the next *Galaxy Update https://wiki.galaxyproject.org/GalaxyUpdates*, please let us know. Dave Clements and the Galaxy Teamhttps://wiki.galaxyproject.org/GalaxyTeam -- http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ http://wiki.galaxyproject.org

Re: [galaxy-user] problem with scientific notation sorting and filtering in galaxy

2014-01-31 Thread Dave Clements
Hi Douglas, I encourage you and anyone else that has encountered this error to up-vote this issue in the Galaxy Trello board: https://trello.com/c/QZlmb0Yf That will help us prioritize work. Thanks for reporting this. Dave C On Thu, Jan 30, 2014 at 10:24 AM, Douglas Cavener d...@psu.edu

[galaxy-user] GCC2014 Early Registration and Abstract Submission are now OPEN!

2014-02-14 Thread Dave Clements
Hello all, *We are pleased to announce that Early Registration https://wiki.galaxyproject.org/Events/GCC2014/Register and Talk and Poster Abstract Submission https://wiki.galaxyproject.org/Events/GCC2014/Abstracts are now open for the 2014 Galaxy Community Conference (GCC2014)

[galaxy-user] March 2014 Galaxy Update Newsletter

2014-02-28 Thread Dave Clements
#ToolShed_Contributions - Other Newshttps://wiki.galaxyproject.org/GalaxyUpdates/2014_03#Other_News If you have anything you would like to see in the next *Galaxy Update https://wiki.galaxyproject.org/GalaxyUpdates*, please let us know. Thanks, Dave Clements and the Galaxy Teamhttps

Re: [galaxy-user] please unsubscribe

2014-03-17 Thread Dave Clements
Hi Bogdan, You have been unsubscribed. For future reference of others who want to unsubscribe: 1. Go to http://lists.bx.psu.edu/listinfo/galaxy-user and scroll to the bottom of the page. 2. Enter the email address that you receive list email at (check the full header of the email) and click the

[galaxy-user] Usegalaxy.org network upgrade this Saturday

2014-03-18 Thread Dave Clements
Hello all, Access to all TACC resources and services, including UseGalaxy.orghttps://usegalaxy.org/, will be unavailable between 9 a.m. - 5 p.m. (US Central Time) on Saturday, March 22. TACC staff will be performing an upgrade to the networking infrastructure. During this outage, users are

Re: [galaxy-user] GCC2014 Early Registration and Abstract Submission are now OPEN!

2014-03-25 Thread Dave Clements
On Fri, Feb 14, 2014 at 1:33 PM, Dave Clements cleme...@galaxyproject.orgwrote: Hello all, *We are pleased to announce that Early Registration https://wiki.galaxyproject.org/Events/GCC2014/Register and Talk and Poster Abstract Submission https://wiki.galaxyproject.org/Events/GCC2014/Abstracts

[galaxy-user] April 2014 Galaxy Update Newsletter: GCC2014 Talk Abstracts due this Friday

2014-03-31 Thread Dave Clements
let us know. Dave Clements and the Galaxy Teamhttps://wiki.galaxyproject.org/GalaxyTeam -- http://galaxyproject.org/GCC2014 http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ https://wiki.galaxyproject.org/ ___ The Galaxy

[galaxy-user] GCC2014 Poster Abstracts due April 25, THIS FRIDAY

2014-04-21 Thread Dave Clements
accepted talks will start showing up on the website this week. Thanks, and hope to see you in Baltimore, Dave C On Fri, Feb 14, 2014 at 1:33 PM, Dave Clements cleme...@galaxyproject.orgwrote: Hello all, *We are pleased to announce that Early Registration https://wiki.galaxyproject.org/Events

[galaxy-user] Galaxy User List Being Retired on June 6, 2014.

2014-05-30 Thread Dave Clements
Hello all, In case you didn't see this it the June Galaxy Newsletter http://bit.ly/SX3MuS that went out today: Galaxy-User Being Retired June 6 [image: Galaxy Biostar] https://biostar.usegalaxy.org/ Join the conversation! Learn how here https://wiki.galaxyproject.org/Support/Biostar. The

[galaxy-user] Galaxy-User has moved to Galaxy Biostar

2014-06-06 Thread Dave Clements
Hello all, After 8+ years and more than 8100 posts, the Galaxy-User mailing list has been retired. But, don't worry, you can still get Galaxy user support at Galaxy Biostar (https://biostar.usegalaxy.org/), an online user support forum that has replaced this list. Past postings to this list are