I am a relatively new Galaxy user. I am wondering if there is an example of
a tool which allows users to view at the stdout/err of a tool live while it
is still running to get a sense of progress it is making.
The tools I have had experience with so far will save the stdout/err or an
I am wondering if it is possible in Galaxy to design a tool whose sole
purpose is to run other tools.
This is motivated by our desire to enhance execution capabilities of
existing tools via a generic tool which acts as a wrapper.
In a test tool that I am working on, I need to enter text preceded by a $
sign to be interpreted as an environment variable by the underlying running
script. However, it seems that the $ sign gets converted to X when it gets
passed to the tool executable.
Is there a way to work around this
Just wanted to report that \$ does not work; \ adds one more X.
On Fri, Jan 31, 2014 at 11:29 AM, Peter Cock p.j.a.c...@googlemail.comwrote:
On Fri, Jan 31, 2014 at 5:13 PM, Ketan Maheshwari
In a test tool that I am working on, I need
Thank you. It worked and the sanitizer tag sounds very useful.
On Sat, Feb 1, 2014 at 4:14 AM, Björn Grüning bjoern.gruen...@gmail.comwrote:
it sounds like your input is sanitized. You can disable it for your
whole wrapper or you can write a special sanitizer for your input field:
I renamed my tool name in tool name= but when I restart Galaxy server,
I see a dropdown in front of the tool title with two versions with same
value. When I select one it gives current name and when selecting other it
gives the older name of the tool.
My intention here was to rename the tool
This is a tool I am developing. In Galaxy admin, I could not find any
option to manage tools and versions.
In my tools directory, there is just one tool xml file for this tool.
On Sat, Feb 1, 2014 at 6:40 PM, Björn Grüning bjoern.gruen...@gmail.comwrote:
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