[galaxy-user] adding references

2012-10-22 Thread mark.rose
Hello I'm trying to learn how to install my own references for alignment in galaxy. I've found posts citing the following link as being helpful https://bitbucket.org/galaxy/galaxy-central/wiki/NGSLocalSetup This however link appears broken. Can anyone redirect me? Thanks Mark This

[galaxy-user] gather results from multiple histories

2013-02-01 Thread mark.rose
Hi All Let's say that I have results produced from a step in multiple different histories and that I now want to gather these results into a new history so that they can be joined. Is there a way to do this without exporting results to my desktop and then uploading? Thanks Mark This

[galaxy-user] gather results from multiple histories

2013-02-01 Thread mark.rose
Hi All Let's say that I have results produced from a step in multiple different histories and that I now want to gather these results into a new history so that they can be joined. Is there a way to do this without exporting results to my desktop and then uploading? Thanks Mark This

[galaxy-user] make publish histories only available to specific users

2013-11-12 Thread mark.rose
Hello I am wondering whether it is possible to publish histories so that only certain users can see them. Histories that are published, rather than shared, appear to be more searchable. Thanks Mark This message may contain confidential information. If you are not the designated

[galaxy-user] bowtie2

2013-11-16 Thread mark.rose
Hi All I'm trying to use bowtie2 in Galaxy but though I have uploaded a valid pair of fastq files, Galaxy seems to recognize only one of the and places it in both inputs for paired end reads without any other options in the drop down menus. Thanks for your help Mark This message may

[galaxy-user] processing multiple files

2014-02-26 Thread mark.rose
Hello Is there a approved way to configure or otherwise use galaxy to process multiple files with a tool or workflow? Using FASTQ Groomer on dozens of files individually is excruciating. Thanks Mark This message may contain confidential information. If you are not the designated