Re: [galaxy-user] Data gets deleted from public server

2011-11-08 Thread Jennifer Jackson

Hi Shamsher,

Are you by chance working with more than one open Galaxy browser window 
at a time? Doing this is not recommended as it can cause confusing 
results between the histories. Instead, move between histories using the 
Options - Saved Histories form, in a single browser window.


Please let us know if you are still having problems,

Best,

Jen
Galaxy team


On 11/7/11 5:53 PM, shamsher jagat wrote:

Yes I was and infect when I logged out and logged in back it was there
then I left for lunch and when I come back data is not there? It is weird.
Shamsher


On Mon, Nov 7, 2011 at 5:00 PM, Nate Coraor n...@bx.psu.edu
mailto:n...@bx.psu.edu wrote:

On Nov 7, 2011, at 7:11 PM, shamsher jagat wrote:

  I uploaded two BAM files and was working with them but when I
tried to use them again they are automatically deleted along with
all the steps of analysis?
  Any reason or I am missing something.

Hi Shamsher,

Were you logged in when you performed this analysis?

--nate

 
  Shamsher
  ___
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--
Jennifer Jackson
http://usegalaxy.org
http://galaxyproject.org/wiki/Support
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Re: [galaxy-user] Data gets deleted from public server

2011-11-08 Thread shamsher jagat
Could you direct me how I can save history from a series of steps I have
performed in Galaxy and can later use the same work flow steps. I think
this is what is happening when I logged in back there were two windows open
with my log in info

Thanks

Shamsher

On Tue, Nov 8, 2011 at 5:36 AM, Jennifer Jackson j...@bx.psu.edu wrote:

 Hi Shamsher,

 Are you by chance working with more than one open Galaxy browser window at
 a time? Doing this is not recommended as it can cause confusing results
 between the histories. Instead, move between histories using the Options
 - Saved Histories form, in a single browser window.

 Please let us know if you are still having problems,

 Best,

 Jen
 Galaxy team



 On 11/7/11 5:53 PM, shamsher jagat wrote:

 Yes I was and infect when I logged out and logged in back it was there
 then I left for lunch and when I come back data is not there? It is weird.
 Shamsher


 On Mon, Nov 7, 2011 at 5:00 PM, Nate Coraor n...@bx.psu.edu
 mailto:n...@bx.psu.edu wrote:

On Nov 7, 2011, at 7:11 PM, shamsher jagat wrote:

  I uploaded two BAM files and was working with them but when I
tried to use them again they are automatically deleted along with
all the steps of analysis?
  Any reason or I am missing something.

Hi Shamsher,

Were you logged in when you performed this analysis?

--nate

 
  Shamsher
  __**_
  The Galaxy User list should be used for the discussion of
  Galaxy analysis and other features on the public server
  at usegalaxy.org http://usegalaxy.org.  Please keep all replies

on the list by
  using reply all in your mail client.  For discussion of
  local Galaxy instances and the Galaxy source code, please
  use the Galaxy Development list:
 
  
 http://lists.bx.psu.edu/**listinfo/galaxy-devhttp://lists.bx.psu.edu/listinfo/galaxy-dev
 
  To manage your subscriptions to this and other Galaxy lists,
  please use the interface at:
 
  http://lists.bx.psu.edu/




 __**_
 The Galaxy User list should be used for the discussion of
 Galaxy analysis and other features on the public server
 at usegalaxy.org.  Please keep all replies on the list by
 using reply all in your mail client.  For discussion of
 local Galaxy instances and the Galaxy source code, please
 use the Galaxy Development list:

   
 http://lists.bx.psu.edu/**listinfo/galaxy-devhttp://lists.bx.psu.edu/listinfo/galaxy-dev

 To manage your subscriptions to this and other Galaxy lists,
 please use the interface at:

   http://lists.bx.psu.edu/


 --
 Jennifer Jackson
 http://usegalaxy.org
 http://galaxyproject.org/wiki/**Supporthttp://galaxyproject.org/wiki/Support

___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using reply all in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
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Re: [galaxy-user] Data gets deleted from public server

2011-11-08 Thread Jennifer Jackson

Hello,

Histories are saved automatically and can be renamed from the active 
history panel or Saved history form. To create a Workflow from a 
history, use Options - Extract Workflow.


Workflows are covered in the Galaxy 101 tutorial:
http://main.g2.bx.psu.edu/u/aun1/p/galaxy101

Thank you,

Jen
Galaxy team

On 11/8/11 7:48 AM, shamsher jagat wrote:


Could you direct me how I can save history from a series of steps I have
performed in Galaxy and can later use the same work flow steps. I think
this is what is happening when I logged in back there were two windows
open with my log in info

Thanks

Shamsher

On Tue, Nov 8, 2011 at 5:36 AM, Jennifer Jackson j...@bx.psu.edu
mailto:j...@bx.psu.edu wrote:

Hi Shamsher,

Are you by chance working with more than one open Galaxy browser
window at a time? Doing this is not recommended as it can cause
confusing results between the histories. Instead, move between
histories using the Options - Saved Histories form, in a single
browser window.

Please let us know if you are still having problems,

Best,

Jen
Galaxy team



On 11/7/11 5:53 PM, shamsher jagat wrote:

Yes I was and infect when I logged out and logged in back it was
there
then I left for lunch and when I come back data is not there? It
is weird.
Shamsher


On Mon, Nov 7, 2011 at 5:00 PM, Nate Coraor n...@bx.psu.edu
mailto:n...@bx.psu.edu
mailto:n...@bx.psu.edu mailto:n...@bx.psu.edu wrote:

On Nov 7, 2011, at 7:11 PM, shamsher jagat wrote:

  I uploaded two BAM files and was working with them but when I
tried to use them again they are automatically deleted along
with
all the steps of analysis?
  Any reason or I am missing something.

Hi Shamsher,

Were you logged in when you performed this analysis?

--nate

 
  Shamsher
  _
  The Galaxy User list should be used for the discussion of
  Galaxy analysis and other features on the public server
  at usegalaxy.org http://usegalaxy.org
http://usegalaxy.org.  Please keep all replies

on the list by
  using reply all in your mail client.  For discussion of
  local Galaxy instances and the Galaxy source code, please
  use the Galaxy Development list:
 
  http://lists.bx.psu.edu/__listinfo/galaxy-dev
http://lists.bx.psu.edu/listinfo/galaxy-dev
 
  To manage your subscriptions to this and other Galaxy lists,
  please use the interface at:
 
  http://lists.bx.psu.edu/




_
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org http://usegalaxy.org.  Please keep all
replies on the list by
using reply all in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

http://lists.bx.psu.edu/__listinfo/galaxy-dev
http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

http://lists.bx.psu.edu/


--
Jennifer Jackson
http://usegalaxy.org
http://galaxyproject.org/wiki/__Support
http://galaxyproject.org/wiki/Support




--
Jennifer Jackson
http://usegalaxy.org
http://galaxyproject.org/wiki/Support
___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using reply all in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

 http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
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 http://lists.bx.psu.edu/


Re: [galaxy-user] Data gets deleted from public server

2011-11-07 Thread Nate Coraor
On Nov 7, 2011, at 7:11 PM, shamsher jagat wrote:

 I uploaded two BAM files and was working with them but when I tried to use 
 them again they are automatically deleted along with all the steps of 
 analysis?
 Any reason or I am missing something.

Hi Shamsher,

Were you logged in when you performed this analysis?

--nate

 
 Shamsher
 ___
 The Galaxy User list should be used for the discussion of
 Galaxy analysis and other features on the public server
 at usegalaxy.org.  Please keep all replies on the list by
 using reply all in your mail client.  For discussion of
 local Galaxy instances and the Galaxy source code, please
 use the Galaxy Development list:
 
  http://lists.bx.psu.edu/listinfo/galaxy-dev
 
 To manage your subscriptions to this and other Galaxy lists,
 please use the interface at:
 
  http://lists.bx.psu.edu/


___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using reply all in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/


Re: [galaxy-user] Data gets deleted from public server

2011-11-07 Thread shamsher jagat
Yes I was and infect when I logged out and logged in back it was there then
I left for lunch and when I come back data is not there? It is weird.
Shamsher


On Mon, Nov 7, 2011 at 5:00 PM, Nate Coraor n...@bx.psu.edu wrote:

 On Nov 7, 2011, at 7:11 PM, shamsher jagat wrote:

  I uploaded two BAM files and was working with them but when I tried to
 use them again they are automatically deleted along with all the steps of
 analysis?
  Any reason or I am missing something.

 Hi Shamsher,

 Were you logged in when you performed this analysis?

 --nate

 
  Shamsher
  ___
  The Galaxy User list should be used for the discussion of
  Galaxy analysis and other features on the public server
  at usegalaxy.org.  Please keep all replies on the list by
  using reply all in your mail client.  For discussion of
  local Galaxy instances and the Galaxy source code, please
  use the Galaxy Development list:
 
   http://lists.bx.psu.edu/listinfo/galaxy-dev
 
  To manage your subscriptions to this and other Galaxy lists,
  please use the interface at:
 
   http://lists.bx.psu.edu/


___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using reply all in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/