Re: [galaxy-user] One question about the genome coordinates when using Fetch Sequences

Hello, The coordinates are interpreted in Galaxy as having a 0-based start. This means that in order to determine the actual start genome position, add 1. Not a stupid question - everyone has to learn this as they begin to work with data types sourced originally from UCSC and associated

[galaxy-user] BED to GFF

I am trying to use the galaxy BED to GFF function. The operation worked, but instead of giving me back any feature information (e.g., exon, intron, repeat, etc.); I just received back the sequence of the interval contained within the BED file. Does anyone know what I'm doing wrong? Moreover,

Re: [galaxy-user] RNA seq analysis and GTF files

David, can you please share your history with me and I'll take a look (History Options -- Share/Publish -- Share with User -- my email? Thanks, J. On Apr 7, 2011, at 3:23 PM, David K Crossman wrote: Hello! I would like to ask a question related to this thread below. I