2011/6/2 Nate Coraor <n...@bx.psu.edu>: > Hi Louise-Amélie, > > I haven't done anything with this code yet, but I wanted to let you know > that we'll eventually be adding it, I'm just going to change the > implementation slightly. I'd like to merge the functionality of the csv > into an xml config I'm already working on (but haven't yet fully decided > on the syntax). And it should be possible for tools to access these > parameters in the command line template. A lot of our NGS tools have > the number of threads to use hardcoded in the tool config, which is bad. > > --nate
On a related point, I've previously suggested a $variable could be defined for use in tool XML wrappers to set the number of threads. This number could come from a general configuration file, or perhaps via the cluster settings - the point is the tool doesn't need to know, it just gets told how many threads it is allowed. Peter ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
