Dear all,
I have a problem with the weblogo tool.
I have a clustalw alignment in fasta format that I'd like to visualize
as a logo. The sequence logo module ends with a success (green box), the
info tells me the amount and length of the input data. But the output is
empty, there are no plots (no
Hi,
I am working with HeLa cells and want to know how to get cufflinks etc. to
highlight if a region of the genome is being transcribed that is not in the
ensembl gtf. I know that cufflinks highlights with class code j regions that
do not match a known gene and therefore may be novel but most
Of course - Doh! Many thanks!!
On 4 Jul 2011, at 18:47, Oliver, Gavin wrote:
u represents unknown intergenic transcripts.
-Original Message-
From: galaxy-user-boun...@lists.bx.psu.edu on behalf of David Matthews
Sent: Mon 04/07/2011 17:48
To: galaxy-user@lists.bx.psu.edu
Hello Rubina,
I'm not familiar with Windows 7, so I'm forwarding your email to the galaxy
public mailing list, where the Galaxy team can further help you with your fastq
conversion.
-gordon
Begin forwarded message:
From: rdalv...@students.poly.edumailto:rdalv...@students.poly.edu
Date: July
One question related to this If I am intrested in annotated genes/transcripts,
what change I may have to make in command line while runnig Cufflinks so that
it will give both unknown as well as known transcrpts and genes?
Thanks
--- On Mon, 7/4/11, David Matthews d.a.matth...@bristol.ac.uk
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