[galaxy-user] galaxy test-data organization

2011-08-27 Thread Joseph Hargitai
=== Please use Reply All when responding to this email! === Hi, is there by any chance a per application breakdown of the test-data structure? best, joe ___ The Galaxy User list should be used for the discussion of Galaxy analysis and

Re: [galaxy-user] Cufflinks quartile normalization

2011-08-27 Thread Jeremy Goecks
=== Please use Reply All when responding to this email! === David, Quartile normalization is explained in the Cufflinks manual: http://cufflinks.cbcb.umd.edu/manual.html -- With this option, Cufflinks normalizes by the upper quartile of the number of fragments mapping to individual loci