[galaxy-user] aligning long reads

2011-10-03 Thread Shalabh Sharma
Hi, I am new to mapping. I have reads ranging from 150-300bp, i am not sure which is the best suitable program for that in Galaxy. I already tried bwa but i am not sure if thats the best choice for long reads. Thanks Shalabh ___ The

Re: [galaxy-user] TopHat--BAM merge

2011-10-03 Thread Jennifer Jackson
Hi Rich, Are you using a local instance or the main public instance at http://usegalaxy.org? There was a bug fix to this tool on the public instance right around the time this error was reported. Please try the job again. If it fails, it may be that the files are too large, although an