Re: [galaxy-user] fastq groomer

2011-11-01 Thread Kevin Lam
actually Illumina 1.8+ has one more quality value higher than fastqsanger (see http://en.wikipedia.org/wiki/FASTQ_format ) my question now I guess is if I use fastqsanger would it break anything when it encounters the 'J' in the qual values? On Tue, Oct 18, 2011 at 5:10 PM, Peter Cock

Re: [galaxy-user] fastq groomer

2011-11-01 Thread Peter Cock
On Tue, Nov 1, 2011 at 4:58 PM, Kevin Lam abou...@gmail.com wrote: actually Illumina 1.8+ has one more quality value higher than fastqsanger (see http://en.wikipedia.org/wiki/FASTQ_format ) my question now I guess is if I use fastqsanger would it break anything when it encounters the 'J' in