[galaxy-user] combine data

2011-11-18 Thread dongdong zhaoweiming
Hi, Can galaxy combine lots of data into a single file using cat? I have a 2GB sam type data, but I can't upload it by URL under my condition, so I want to spilt it into three files and upload it to galaxy and then combine it? Thanks a lot!weimin

Re: [galaxy-user] combine data

2011-11-18 Thread Kevin L
Text Manipulation http://main.g2.bx.psu.edu/root/tool_menu# - Concatenate datasets http://main.g2.bx.psu.edu/tool_runner?tool_id=cat1 tail-to-head is the equivalent of cat :) btw galaxy also accepts gzipped files so you can upload it faster that way Cheers Kevin On 18 November 2011 16:40,

Re: [galaxy-user] combine data

2011-11-18 Thread Jennifer Jackson
Hello Weimin, Instead of splitting up the file, using FTP with a desktop client would be a simpler solution. Please see: http://galaxyproject.org/wiki/Support#Trouble_loading_data If you do decide to split and merge anyway, Kevin pointed out the correct tool for the merge: Concatenate

[galaxy-user] Fwd: BioMart - DATABASE Special Issue

2011-11-18 Thread Arek Kasprzyk
For those of you who use BioMart as a Galaxy data source Dear All, I am very pleased to announce the publication of the DATABASE special issue dedicated to the BioMart project http://www.oxfordjournals.org/our_journals/databa/biomart_virtual_issue.html BioMart is a unique open source data

[galaxy-user] November 18, 2011 Galaxy Development News Brief

2011-11-18 Thread Jennifer Jackson
November 18, 2011 Galaxy Development News Brief This release http://galaxyproject.org/wiki/News%20Briefs/2011_11_18 Release history http://galaxyproject.org/wiki/News%20Briefs Source http://getgalaxy.org Support http://galaxyproject.org/wiki/Support new: % hg clone