Hi,
I'm building a Galaxy Cloud implementation, and running into a problem
uploading data files 1 Mbyte, or 1,048,576 bytes.
I've started Galaxy Cloudman and a single server, all according to to the
Wiki. I can upload fasta format files 1048756 bytes, and general CSV
format peptide files, and
Dannon,
Thanks. Glad it's not my error !
Could ypu let me know where nginx.conf is, and how to restart the nginx
process ? This is a prototype proof-of-concept implementation, and I think
a once-per-instance custom fix which preserves the simple ability to use
Get Data / Upload Files From Your
It's the other nginx.conf at /opt/galaxy/pkg/nginx/conf/nginx.conf, I don't
think that one you found is used. And it isn't explicitly set at all
currently, so the default 1m gets applied.
And, to reload with the modified config, I think this should do the trick (as
the ubuntu user)-
sudo
Dannon,
Cool, that seems to have worked. I set
server {
listen 80;
client_max_body_size 500m;
in /opt/galaxy/pkg/nginx/conf/nginx.conf
and issued sudo kill -HUP `cat /opt/galaxy/pkg/nginx/logs/nginx.pid`
and it's uploading my test files of 2mb to 25mb ok.
I think
Great, glad it worked for you!
And, once we release a new AMI, it'll be fixed retroactively. That is, you'll
be able to use your existing cloud setup with the new AMI and it should just
work.
-Dannon
On Jan 23, 2012, at 5:35 AM, Greg Edwards wrote:
Dannon,
Cool, that seems to have
Hi Carlos,
Thanks! I didn't realise the conversion was doing that.
In fact I want bam files (I'm also using GATK) so this is really helpful.
Cheers,
Clare
On Thu, Jan 19, 2012 at 2:32 AM, Carlos Borroto
carlos.borr...@gmail.com wrote:
Hi Clare,
I ran into a similar question testing out GATK
Hi Claire,
Your welcome!.
If you feel it could be helpful, this is what I have so far as a
workflow for GATK:
http://test.g2.bx.psu.edu/u/cjav/w/gatk
Is not complete, but I think it could be a good starting point. Please
if you ended using this workflow as a starting point and find
something
Dear all,
I have not been able to resume any of my interrupted uploads via FTP to the
main Galaxy server. I use FileZilla and every time I click the resume button,
instead of resuming from where it left off, the transfer always starts from
scratch. Would anybody be able to tell me what I might
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