Hello all,
The May 2012 Galaxy Update
http://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_05is now available (
http://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_05). *Galaxy
Updatehttp://wiki.g2.bx.psu.edu/GalaxyUpdates
* is a (mostly) monthly summary of what is going on in the Galaxy
community. *Galaxy
I want to make an intersection between a few hundreds of genomic intervals
(predicted translocation sites from SVDetect) and low mappability regions in
genomes (we are working with mm9 right now).
UCSC has an excellent mappability track that exactly matches our sequencing
data (50 bp kmers),
Hi Stuart,
If you are able to rsync the Mapability bigWig file from the UCSC
downloads server and covert to BED using their compiled tools (also
available on same server), then the rest should be fairly straightforward.
1 - Load the data into Galaxy using FTP:
There was a temporary cluster issue, but it looks like jobs are running again.
Try resubmitting your jobs now, and they should succeed.
-Dannon
On May 1, 2012, at 8:30 PM, Jeremy Coate wrote:
Hi all,
FYI, I've gotten the same error recently when trying to run Bowtie (using
Galaxy Main).
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