[galaxy-user] Question about fetching sequence from genome

Hi I want to fetch sequence from soybean genome, according to a gff file. My gff3 file and genome file are attached to the email, because it is not easy to recongnize the format if I paste it in the email. And it keeps reporting the error: An error occurred running this job: Traceback (most

[galaxy-user] Genome Browser Histogram Visualization of Accepted Hits

Hello, I am attempting to run accepted hit data from Tophat output into the UCSC Genome Web Browser for visualization of sequencing hits in specific genes. However, the BAM files yield tiles and are too large to present through the browser. Is there a better file format to convert to that

Re: [galaxy-user] How to control registration

I tried changing both files /mnt/galaxyTools/galaxy-central/universe_wsgi.ini and /mnt/cm/universe_wsgi.ini.cloud but after reboot of headnode the changes are gone . any hint ? Zeeshan On Thu, May 24, 2012 at 10:30 AM, Roman Valls Guimera brainst...@nopcode.org wrote: Zeeshan, AFAIK

Re: [galaxy-user] Bowtie mapping problem

Hello Hemant, IDs such as this (resulting from the CASAVA 1.8+ pipeline) work with most tools. For a few others, there is an open ticket at bitbucket to track the progress: https://bitbucket.org/galaxy/galaxy-central/issue/677/update-joiner-tool-to-work-with-casava-18 However, a problem with