Re: [galaxy-user] Errors during database migration after updating galaxy

Hello Joel, The main Galaxy tool shed is back up - thanks for reporting this problem. Greg Von Kuster On Sep 30, 2012, at 5:34 PM, Joel Rosenberg wrote: > It looks like the galaxy toolshed is down. > > The migration script is trying to download this: > > http://toolshed.g2.bx.psu.edu/reposito

[galaxy-user] igenome error

I try to download the human hg19 from igenomes in galaxy. I use 'shared data' > 'data libraries' > 'igenomes' > select hg19, but this persistently downloads the mm9 mouse genome not the human genome. Any suggestions? Paul Brady Afdeling CME-UZ, O&N I Herestraat 49 - bus 602, 3000 Leuven, Belgium

Re: [galaxy-user] igenome error

Although there was a hg19 folder in the iGenomes data library, it was empty. This was probably causing your problem. I've uploaded the iGenomes hg19 gene annotation to the iGenomes/hg19 folder and it should be accessible now. Best, J. On Sep 29, 2012, at 12:48 PM, Paul Brady wrote: > I try to

Re: [galaxy-user] igenome error

J, Thanks for doing this. Cheers D Sent from my iPhone On 1 Oct 2012, at 15:38, Jeremy Goecks wrote: > Although there was a hg19 folder in the iGenomes data library, it was empty. > This was probably causing your problem. > > I've uploaded the iGenomes hg19 gene annotation to the iGenomes/hg1

[galaxy-user] October 2012 Galaxy Update

Hello all, The October 2012 Galaxy Update is now available :** - Upcoming Events and Deadlines - 35 new papers

Re: [galaxy-user] FTP Upload Error

Hi Amanda, If you have not tried already, would you please try to load again and let us know if you continue to have problems? Thanks! Jen Galaxy team On 9/21/12 7:34 AM, Amanda Jones wrote: I'm having trouble uploading via FTP to my Galaxy account. I've been receiving the following error