Re: [galaxy-user] cuffdiff fpkm=0 "not significant"

ib, Look at the status column. I suspect that for this example you given the status is HiData. Cuffdiff considers the expression are very high and no statistic testing would have been done for the gene. fpkm 2=0 could be misleading, as it may not be actually 0. I have encountered in a data

[galaxy-user] encode rna-seq data

Hi everyone, I'm new in Galaxy and I want to know if is possible download whole rna-seq data from ENCODE project to my local galaxy instance (I have a disk of 5 To) . If yes, would you explain me how I can do this? Thank you in advance for your answer, L _

Re: [galaxy-user] encode rna-seq data

Hello Laura, The ENCODE data is available via FTP hosted by UCSC. This is the main portal: http://genome.ucsc.edu/ENCODE/ Follow the downloads link, then scroll down to the RNA-seq tracks. Click on the tracks you are interested in to locate the directories containing both the UCSC tracks and