Re: [galaxy-user] Teaching GALAXY

NGS jobs are experiencing significant delays at this time due to load -- we're looking into it. Regarding the local install I'd have to recommend pinging the administrator on site there -- they should be able to help out. -Dannon On Nov 8, 2012, at 10:44 AM, Larry Reiter lrei...@uthsc.edu

[galaxy-user] Byte-range request problem

Dear all, I'm currently trying to set up a Galaxy instance behind an Apache server for my lab. I strictly applied the procedure described there: http://wiki.galaxyproject.org/Admin/Config/Apache%20Proxy, using a /galaxy subdirectory, stopping before the External user authentication paragraph (I

[galaxy-user] How to show sequence length data

Hi, there I'm new to this field and have a question when using Galaxy. I have RNA sequence data. How can I plot the graph of the length of sequence with Galaxy. Thanks! ___ The Galaxy User list should be used for the discussion of

[galaxy-user] Identification of replicate outlier

Hello list, I've been analyzing an experiment with two groups each with three replicates. My workflow was TopHat (paired end) - Cufflinks - CuffDiff. Unfortunately, there are not many significant differences identified by CuffDiff. I am wondering whether one of my replicates might be an outlier.

Re: [galaxy-user] Identification of replicate outlier

Hi Dave, This is an interesting and non-trivial question that extends well beyond Galaxy - and there's no simple solution AFAIK Defining an 'outlier' tends to boil down to subjective judgement in most real cases I've seen. EG: see