After successfully using RNAseq software in Galaxy online for about 10
different datasets to just get gene expression differences between
replicates from control versus exposed zebrafish embryos, I am having no
luck getting cuffdiff to work with the "moved" Galaxy.
I had this problem with histor
Are you reporting a bug for each failed Cuffdiff run? That's the easiest way
for the Galaxy team to help you out. One thing to keep in mind is that, for
now, spaces are not allowed in condition names. We'll address this problem soon.
Best,
J.
On Oct 22, 2013, at 5:42 AM, Elwood Linney wrote:
Elwood,
Would you please share:
1. an original history that worked (if possible)
2. the workflow you are using and let me know how you generated (did you
extract it recently (last week or so)?
3. problem history
There are a few known issues in here, some mitigated, one that has to do
with ex
Hi Elwood,
Jeremy and I took at a look at this. The failures in your history with this
message:
Error: number of labels must match number of conditions
...are due to a regression in the cuffdiff tool which Jeremy has just fixed.
Some characters such as spaces in the condition name were val
thank you all, its clearly working now and that is coming just in time, the
results of two of these datasets will help us plan our next experiments for
capping up a manuscript or two
el linney
On Tue, Oct 22, 2013 at 12:03 PM, Nate Coraor wrote:
> Hi Elwood,
>
> Jeremy and I took at a look at
This is great news, thanks for letting us know.
--nate
On Oct 22, 2013, at 2:34 PM, Elwood Linney wrote:
> thank you all, its clearly working now and that is coming just in time, the
> results of two of these datasets will help us plan our next experiments for
> capping up a manuscript or two
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