[galaxy-user] Trackster error on dbkeys

2014-04-10 Thread Aarthi Mohan
Hi all, I am setting up galaxy on a server running CentOS 6.5. I found that Trackster application hits me with an error Could not load chroms for this dbkey: PF3D7, when I try add new track from Visualization. I am working with Plasmodium falciparum (PF3d7) genome, and I followed the instruction

[galaxy-user] server problem?

2014-04-10 Thread Sarah Schaack
Hi there! I am teaching a workshop in East Africa, right this second, and we are trying to use a tool in galaxy (not too complex, files are not huge) to illustrate RNA-seq analysis. The server is SOOO slow-- is there a problem? Should we abandon ship and teach them Tophat using the command

[galaxy-user] Can not delete data from my local galaxy

2014-04-10 Thread Nishant THAKUR
Hello, I am using local galaxy server. I have disc storage problem and I noticed that galaxy is utilizing most of the space. I deleted old projects permanently, but they are appearing again in the saved history with one message which says datasets were not removed from disk because that

Re: [galaxy-user] server problem?

2014-04-10 Thread Jennifer Jackson
Hi Sarah, Using the public Main server for workshops is not recommended, however a Cloudman Galaxy is a great option. Amazon has a teaching grant program to help with funding that is very generous (Galaxy is free! grant is for cloud resources data/compute). For next time, here is the link

Re: [galaxy-user] Can not delete data from my local galaxy

2014-04-10 Thread Daniel Blankenberg
Hi Nishant, In your universe_wsgi.ini file, you need to set: allow_user_dataset_purge = True Thanks for using Galaxy, Dan On Apr 10, 2014, at 8:09 AM, Nishant THAKUR tha...@ciml.univ-mrs.fr wrote: Hello, I am using local galaxy server. I have disc storage problem and I noticed that

[galaxy-user] Add Tribolium genome

2014-04-10 Thread Brenda Oppert
I thought that the genome sequence for Tribolium castaneum (Tcas3.0) was in the genome pull-down, but I don't see it. Can it be added? Thanks, Brenda ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other

Re: [galaxy-user] Add Tribolium genome

2014-04-10 Thread Brenda Oppert
Thanks-found it! We have a lot of data, but are trying to convert some data to BED format, and I think that this will help. Brenda On Apr 10, 2014, at 7:50 PM, Jennifer Jackson wrote: Hi Brenda, The examples below are labeled by the tool/user interface location where the two menus are