Hi,
I am trying to incorporate GATK in my pipeline but not been able to make it
work. I aligned my data with Hg 19 and then ran sam tool filter and then picard
duplicate removal. I uploaded dbSNP and the reference FASTA file for Hg 19 in
galaxy to run this pipeline. But for some reason GATK too
ssentially cannot use GATK in galaxy.
From: Joshua Orvis [jor...@gmail.com]
Sent: Tuesday, December 11, 2012 5:34 PM
To: Philipe Moncuquet
Cc: Farooq,Umar (res); galaxy-user@lists.bx.psu.edu
Subject: Re: [galaxy-user] GATK Not running
I'm having som
:
total time 0.06
From: Daniel Blankenberg [d...@bx.psu.edu]
Sent: Wednesday, December 12, 2012 4:29 PM
To: Farooq,Umar (res)
Cc: galaxy-user@lists.bx.psu.edu
Subject: Re: [galaxy-user] GATK Not running
Hi Umar,
Can you click the eye icon to view the contents
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