Hi, I'm new to Galaxy and am trying to view several miRNA datasets as a
differential expression. The pipeline I'm using is Bowtie for Illumina
(paired-end run) SAM-to-BAM ? xls. The references I used with Bowtie
are a mature miRNA fasta and a piRNA fasta and the reads are 30nt in length.
So,
The organism is fruit fly. The piRNA reference sequence was obtained from
http://www.fruitfly.org/p_disrupt/TE.html as FASTA.FORMAT.v9.4.1.
I will check out those programs.
Gabriel
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The Galaxy User list should be used for the discussion
, 2013 at 3:20 PM, Gabriel Calvin gac4...@gmail.com wrote:
The organism is fruit fly. The piRNA reference sequence was obtained from
http://www.fruitfly.org/p_disrupt/TE.html as FASTA.FORMAT.v9.4.1.
I will check out those programs.
Gabriel
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