[galaxy-user] How to determine version of Galaxy from main page

2011-12-21 Thread Greg Edwards
page ? I can't see a Version/About type of item, either in menus or lurking in some rev stamp at the bottom of pages etc. Thanks. -- Greg Edwards gedwar...@gmail.com ___ The Galaxy User list should be used for the discussion of Galaxy

Re: [galaxy-user] How to determine version of Galaxy from main page

2011-12-21 Thread Greg Edwards
distribution. See our wiki at http://wiki.g2.bx.psu.edu/News%20Briefs. On Dec 21, 2011, at 4:24 PM, Greg Edwards wrote: Hi folks, I've researched this in the new global Google Search tool http://galaxy.psu.edu/search/web/ but didn't see the answer I needed. Is there actually a single

[galaxy-user] Looking for an easy load test for Galaxy Cloudman

2011-12-26 Thread Greg Edwards
Hi, I'm experimenting with Galaxy Cloudman, and could use a simple workflow to a) test that Galaxy is working ok b) put some significant load on a Galaxy server so that it shows in the load diagram, ie. as below [image: load.png] Suggestions appreciated. Thanks, -- Greg Edwards gedwar

[galaxy-user] Bug ? in Galaxy Cloudman display

2011-12-26 Thread Greg Edwards
Hello again, In the picture below, it seems like the prompt for Autoscaling is obscuring the colour legend for the server status icons. Is there any way to show the legend ? Thanks. [image: load.png] -- Greg Edwards gedwar...@gmail.com

[galaxy-user] Problem with version_command XML tag

2012-01-03 Thread Greg Edwards
-- Greg Edwards gedwar...@gmail.com ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail

[galaxy-user] Config info for: Problem with version_command XML tag

2012-01-03 Thread Greg Edwards
parent: 6160:70d41c4b591e parent: 6159:eafac82b3767 user:John Chilton jmchil...@gmail.com date:Mon Oct 24 15:36:24 2011 -0500 summary: Merging JJ fix with new branch Let me know if other config info is important -- Greg Edwards gedwar...@gmail.com

Re: [galaxy-user] How to add a tool to Cloud Galaxy

2012-01-07 Thread Greg Edwards
know if you have any other questions, and good luck! -Dannon On Jan 6, 2012, at 7:28 PM, Greg Edwards wrote: Hi Folks, I could use some help on adding a tool to the cloud version of Galaxy. The Cloud startup process creates, among other things, /mnt/galaxyTools/galaxy-central which has

[galaxy-user] Should I hg update a Galaxy Cloud ?

2012-01-12 Thread Greg Edwards
Hi, Still experimenting with Galaxy and Cloudman on AWS EC2. The latest galaxy AMI is described as 861460482541/galaxy-cloudman-2011-03-22. How up to date is that Galaxy rev ? Should I use hg to update it before running, or saving as a customised Cloud AMI ? Thanks. -- Greg Edwards, Port

[galaxy-user] Problem uploading files gt 1 Mbyte to Galaxy Cloud

2012-01-23 Thread Greg Edwards
and needs no more description ! If not, please let me know the logs I should look at and whatever else I should check. Many thanks, Greg E -- Greg Edwards, Port Jackson Bioinformatics gedwar...@gmail.com logs.png___ The Galaxy User list should

Re: [galaxy-user] Problem uploading files gt 1 Mbyte to Galaxy Cloud

2012-01-23 Thread Greg Edwards
function correctly. -Dannon On Jan 23, 2012, at 4:09 AM, Greg Edwards wrote: Hi, I'm building a Galaxy Cloud implementation, and running into a problem uploading data files 1 Mbyte, or 1,048,576 bytes. I've started Galaxy Cloudman and a single server, all according to to the Wiki. I

Re: [galaxy-user] Problem uploading files gt 1 Mbyte to Galaxy Cloud

2012-01-23 Thread Greg Edwards
user)- sudo kill -HUP `cat /opt/galaxy/pkg/nginx/logs/nginx.pid` -Dannon On Jan 23, 2012, at 4:43 AM, Greg Edwards wrote: Hi Dannon, I found nginx.conf at /opt/galaxy/pkg/nginx_upload_module-2.0.12/nginx.conf It contains .. client_max_body_size 100m; That looks

[galaxy-user] Progress indicators/feedback for long jobs on Galaxy

2012-03-04 Thread Greg Edwards
hurdles. AWS thinks your'e a spammer and blocks emails after a while ! but you can submit a request to get around that. If anyone's interested let me know. Cheers, Greg E -- Greg Edwards, Port Jackson Bioinformatics gedwar...@gmail.com

[galaxy-user] Problems starting Galaxy Cloudman

2012-03-08 Thread Greg Edwards
types of instance, (tiny/small/medium/large). Is that a recommended AMI now ? It would be good to have a new updated AMI. [image: Inline image 1] Thanks ! -- Greg Edwards, Port Jackson Bioinformatics gedwar...@gmail.com snap1.png___

Re: [galaxy-user] [galaxy-dev] Welcome.html page

2012-03-12 Thread Greg Edwards
Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ -- Greg Edwards, Port Jackson Bioinformatics gedwar...@gmail.com ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features