Thanks for the reply. I tried to use the script provided on a previous
galaxy thread for adding the chr on to the gtf file on the mac terminal but
I keep getting this error -
awk: can't open file ensembl.gtf
source line number 1
I am very new to using the terminal so please let me know if there
I would really appreciate someone's input on some issues I am having with my
cuffdiff output for RNAseq data and how it compares with genes I have
viewed on IGV (or a similar browser) -
1. when I look at my differentially expressed transcripts file (generated
using ensembl hg19 as a reference wit
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