option. (Maybe it already does?)
GTF is an awkward format and BED would work just as well, if not better.
Best wishes,
Ann Loraine
---
Ann Loraine, Ph.D.
Associate Professor
Department of Bioinformatics and Genomics
University of North Carolina at Charlotte
North Carolina
Hello,
This may be useful:
Integrated Genome Browser (the display in IGB link) has gene models for
IRG4.0 in BED format:
http://www.igbquickload.org/quickload/O_sativa_japonica_Jun_2009/O_sativa_japonica_Jun_2009.bed.gz
The original data were taken from Phytozome.net and reformatted to BED.
!
Best wishes,
Ann Loraine
---
Ann Loraine, Ph.D.
Associate Professor
Department of Bioinformatics and Genomics
University of North Carolina at Charlotte
North Carolina Research Campus
600 Laureate Way
Kannapolis, NC 28081
704-250-5750
alora...@uncc.edu
http
What does it tell you about the number of N's (uncalled bases)?
From: Tan, Justin j...@fas.harvard.edumailto:j...@fas.harvard.edu
Date: Thu, 28 Mar 2013 10:41:24 -0400
To: galaxy-user@lists.bx.psu.edumailto:galaxy-user@lists.bx.psu.edu
4 matches
Mail list logo