Hello Miro,
for these kind of general questions I would recommend you to ask in the
bioinformatics forum at http://www.biostars.org/ as it is somewhat
unrelated to Galaxy.
Nevertheless some of the tools you mentioned are installed and available on
the main instance (usegalaxy.org) and some you
Hello Martina,
how did you try to upload it and on what server? I assume it was
usegalaxy.org but please confirm. DId you use the upload button on the main
page or *Get Data / Upload File* from the tool menu? How big is the file?
thanks
Martin, Galaxy team
On Mon, Feb 17, 2014 at 11:37 AM,
1:36 PM, Martin Čech mar...@bx.psu.edu
wrote:
Hello Martina,
how did you try to upload it and on what server? I assume it was
usegalaxy.org but please confirm. DId you use the upload button on the
main page or *Get Data / Upload File* from the tool menu? How big is the
file?
thanks
attaching that too), perhaps that's the problem? Thank you,
Martina
On Monday, February 17, 2014 2:32 PM, Martin Čech mar...@bx.psu.edu
wrote:
Hi Martina,
this is the actual URL of the file:
ftp://ftp.ddbj.nig.ac.jp/ddbj_database/dra/fastq/SRA046/SRA046351/SRX099052/SRR349685.fastq.bz2
Hello,
Björn is exactly right. Link the data to Galaxy as described on the wiki
page he posted.
If you want to run FTP server with Galaxy (it is not included by default)
you have to install and configure it yourself. Here is a wikipage that will
show you how to do it.
Hello Chetan,
Björn sent you a different link yesterday. Please read through it -
especially this part: *Upload files from filesystem paths*.
https://wiki.galaxyproject.org/Admin/DataLibraries/UploadingLibraryFiles
M.
On Tue, Feb 25, 2014 at 5:37 AM, do kadya doka...@gmail.com wrote:
Hi,
Hello Scott,
there is no 'new Galaxy' that has changed the way upload works. If you were
able to upload files before the February release just follow the same path.
The only thing that evolved is that we added another way to upload files
that we are planning to replace the old one with - but that
Vermont 05405 802-656-2482 (AGTC)On 3/14/2014 12:52 PM,
Martin Čech wrote:
Hello Scott,
there is no 'new Galaxy' that has changed the way upload works. If you
were able to upload files before the February release just follow the same
path. The only thing that evolved is that we added another
Hi,
yes, you can link files to a Galaxy Library without copying - please see
https://wiki.galaxyproject.org/Admin/DataLibraries/UploadingLibraryFiles(the
last part 'Upload files from filesystem paths').
And there is an API for libraries (although it is under construction). The
flow of
a watcher in the folder that your tool is creating
files in and upload to Galaxy on change.
If none of these make sense to you please clarify your need.
thanks
Martin
On Wed, Mar 26, 2014 at 2:27 AM, do kadya doka...@gmail.com wrote:
Thank you very much Martin Čech for reply.
Currently I am
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