Two questions, either of which may belong more on the developers list.
But lets try here first:
1. As we migrate services to Galaxy, a stakeholder expressed
concern at uploading large datafiles of several gigabytes. Given that
we can require users to upload from an ftp site or something
for Infections, Health Protection Agency
-Original Message-
From: Pieter Neerincx [mailto:pieter.neeri...@gmail.com]
Sent: 22 March 2011 12:07
To: Paul-Michael Agapow
Cc: galaxy-user@lists.bx.psu.edu
Subject: Re: [galaxy-user] Upload file size and user authorization
Hi Paul,
On Mar 22, 2011
Paul-Michael Agapow would like to recall the message, [galaxy-user] Upload
file size and user authorization.
-
**
The information contained in the EMail and any attachments
From: Tilahun Abebe tilahun.ab...@uni.edu
We are trying to load Illumina data to our local Galaxy instance. The
files are between 700 MB and 2.2 GB. Files below 2 GB load in less
than
5 minutes. Files larger than 2 GB don't upload at all. We installed
Galaxy locally because we thought
Gaurav
1. Is there any help file explaining directory structure and what
all
configuration files used for?
The Galaxy wiki is the best place to go for these things, as
Louise-Amelie said. You should be able to ignore most things in the
config files initially as they will just work. You can
So, I'm trying to setup a smooth pathway for our users to import their
NGS data into Galaxy. I'd hoped for a solution that would require zero
interaction with an administrator, but things seem more awkward than
they should be:
1. We can automagically push produced NGS data into a user import
Perhaps a better question for the dev list but:
It looks as if we are going to be getting a small lump of money to
upgrade our Galaxy instance for wider use within our division. This will
course mean setting up a new server and installing Galaxy, but there are
some other things we'd like:
A peculiar bug, presented for your input:
A colleague has built a few tools and is trying to incorporate them into
a workflow. However:
1. When he creates an new empty workflow, edits it and adds the
tools, they appear without inputs (i.e. the icons/boxes on the diagram
have no input
A perhaps obvious question: how do I work out what version of Galaxy an
instance is?
This has come up a few times because of apparent bugs and different
behaviour across various development and production instances. Now if
you're installed straight from the repo, you can use hg log for the
As per the title, I'm trying to setup a toolshed for our local use. After
creating a repo, I try to upload the initial file only to get:
TypeError: array item must be char
Which seems to happen repeatedly, i.e. it's not a passing error.
While I'm here, a perhaps obvious question: where or
Just today, we had a case where we wanted to rollback to a previous version
of a tool that we'd installed from a toolshed. (No big reason except that
our latest fix actually broke the tool.) Is there a way to do this? I
could have sworn there was but couldn't find it in the admin interface.
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