Re: [galaxy-user] How to decide Mean Inner Distance between Mate Pairs?

On Wed, Aug 15, 2012 at 11:13 AM, Du, Jianguang jia...@iupui.edu wrote: Dear All, I am analyzing the downloaded RNA-seq datasets. However I am not sure how much is Mean Inner Distance between Mate Pairs for these paired-end datasets. Take a paired-end RNA-seq dataset as an example, there

Re: [galaxy-user] Cuffdiff no without replicates

On Wed, Oct 3, 2012 at 7:35 AM, Ross ross.laza...@gmail.com wrote: On Wed, Oct 3, 2012 at 9:11 PM, i b ibse...@gmail.com wrote: Dear all, how reliable is running Cuffdiff without replicates? e.g.one samples agains another one? Is it statistically makign any difference when using replicates?