[galaxy-user] SAM Tools Pileup

2012-07-25 Thread So, Kathy GZ/US
Hi, I'm having trouble with the Generate Pileup tool and hope that you could help me troubleshoot this. I ran the tool successfully with the following options: * Use built-in index * Print the mapping quality as the last column * Print all lines * Cap mapping quality

Re: [galaxy-user] Data Limit

2012-10-08 Thread So, Kathy GZ/US
Hi Mark, Galaxy still lets you reinstate deleted files unless you permanently delete them. You can do this by hitting Purge Deleted Datasets, which pops up in the list when you click on the gear icon in your history. Hope this helps! Kathy -Original Message- From:

Re: [galaxy-user] Data Limit

2012-10-08 Thread So, Kathy GZ/US
-Original Message- From: Mark Lindsay [mailto:m.a.lind...@bath.ac.uk] Sent: Monday, October 08, 2012 11:23 AM To: So, Kathy GZ/US Cc: galaxy-u...@bx.psu.edu Subject: Re: [galaxy-user] Data Limit Hi Kathy I have just tried the Purge Deleted Datasets' and refreshed + logged in/out but still have