Hi Matthew,
The output will have the datatype assigned as 'tabular'. Assign this as
'mpileup' to have the filter tool recognize the dataset. Another option
is to use 'MPileup' with default options (" Genotype Likelihood
Computation: as positive" creates a .bcf output).
To change tabular -> m
I used Bowtie2 on a fastq file. Then, generate pileup on the output
of Bowtie2. When I try to use 'Filter pileup', there is no file
recognized as input even though I have the output from the 'Generate
pileup'.
Matthew
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