Erika,
Although Galaxy doesn't have a suitable mapping tool for fasta format
sequences, you can use the Galaxy clustalw tool option to output a
fasta format file and then upload that fasta file to the ncbi Blast
tool at http://blast.ncbi.nlm.nih.gov/Blast.cgi to find where the
sequences align - bl
Hi Erika,
Unfortunately, Galaxy does not have a parser tool to transform clustal
datatypes into tab-coordinate based files.
Sorry we couldn't help!
Best,
Jen
Galaxy team
On 4/12/12 8:07 AM, Erika Kruse wrote:
Hello,
I imported a sequence alignment file from clustalw. How can I generate a
Hello,
I imported a sequence alignment file from clustalw. How can I generate a
list of the coordinates of the matching regions?
Thank you.
Erika
___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other featur
3 matches
Mail list logo
