Re: [galaxy-user] Barcode splitter on paired end Illumina reads

2013-04-26 Thread Jennifer Jackson
Hello Veranja, Either process is fine - in one you are dividing the groups based on a single match to one end of the pair, in the other based on two independent matches, one to each end of the pair. So the first is less stringent, the second more so. If there are differences in the final resu

[galaxy-user] Barcode splitter on paired end Illumina reads

2013-04-24 Thread Veranja Liyanapathirana
Dear Galaxy team   I am so sorry for repeatedly posting the same question, but I do need some inputs in to this.   Please let mek now the best way to use barcode splitter on Paired end Miseq data. The data is already split for the Illumina indexes using Miseq reporter, what I want to do is to sp