Re: [galaxy-user] ChIP-Seq Normalization to total number of reads

Hi Catheryn, for ChIP-seq analysis, normalisation and BAM file correlation we use deeptTools. Here you can read more about it: https://github.com/fidelram/deepTools And here is the toolshed repository: http://toolshed.g2.bx.psu.edu/view/bgruening/deeptools Cheers, Bjoern Dear Galaxy,

[galaxy-user] ChIP-Seq Normalization to total number of reads

Dear Galaxy, I am trying to analyze my ChIP-Seq data from Illumina using Galaxy. I have 2 datasets that I want to compare after normalizing each of them to their respective inputs, and these 2 datasets have very different number of reads to start with, is there a way to first normalize each