Re: [galaxy-user] CloudMan - Startup Options - Galaxy Cluster vs Data Cluster

2012-01-12 Thread mailing list
Hi guys, Another related question. So if I need a large data set for my program to run on, should that also be stored in GalaxyData? What is the best way to get the data on there? I saw something about FTP but it seemed kind of confusing. Also I chose the data cluster option so I don't think

Re: [galaxy-user] CloudMan - Startup Options - Galaxy Cluster vs Data Cluster

2012-01-12 Thread Dannon Baker
Yes, galaxyData is the only persistent volume you have in your data only cluster, so everything should go there. SCP should work for getting data there, unless the file is already hosted somewhere in which case wget is probably a better choice. And yes, FTP is configured specifically for

Re: [galaxy-user] CloudMan - Startup Options - Galaxy Cluster vs Data Cluster

2012-01-12 Thread mailing list
Ok, yeah, SCP does make sense. Thanks. -Greg On Thu, Jan 12, 2012 at 1:06 PM, Dannon Baker dannonba...@me.com wrote: Yes, galaxyData is the only persistent volume you have in your data only cluster, so everything should go there.  SCP should work for getting data there, unless the file is

Re: [galaxy-user] CloudMan - Startup Options - Galaxy Cluster vs Data Cluster

2012-01-10 Thread mailing list
Thanks. So if I just want to run my own program that uses SGE, it sounds like I shouldn't need a Galaxy instance. Is that right? Does the storage space parameter control how much space is at /mnt/galaxyTools? -Greg On Tue, Jan 10, 2012 at 2:50 PM, Dannon Baker dannonba...@me.com wrote: Data

Re: [galaxy-user] CloudMan - Startup Options - Galaxy Cluster vs Data Cluster

2012-01-10 Thread Dannon Baker
Correct to the first point. The space available to /mnt/galaxyTools is not configurable through the interface, though you could manually resize a volume if you did need more room. /mnt/galaxyData is the volume referred to in the dialogs you're seeing. -Dannon On Jan 10, 2012, at 2:53 PM,