Re: [galaxy-user] Cuffdiff changes

2013-08-23 Thread Jeremy Goecks
Where can I see which version are being used? You can see both the Galaxy tool version and the Cuffdiff tool version (when available) by clicking on the 'view details' icon (the 'i' at the bottom of an expanded dataset). Right now the Cuffdiff version is not displayed, but that will change

Re: [galaxy-user] Cuffdiff changes

2013-08-23 Thread Johanna Sandgren
look forward to the update, will that mean another version of Cuffdiff again? Kind regards, Johanna From: Jeremy Goecks [mailto:jeremy.goe...@emory.edu] Sent: Thursday, August 22, 2013 8:04 PM To: Johanna Sandgren Cc: galaxy-user@lists.bx.psu.edu Subject: Re: [galaxy-user] Cuffdiff changes I am

[galaxy-user] Cuffdiff changes

2013-08-22 Thread Johanna Sandgren
Hi, I am wondering why Cuffdiff suddenly gives many more significant DE genes? I have used same input data and now get approx 5x more significant genes, settings is same with the exception that you now included library normalization and dispersion estimation. See below for parameters. I have