Re: [galaxy-user] Cuffdiff result P and q values

2012-03-20 Thread Jennifer Jackson
Hello Ateeq, It looks like you are working with a bacterial genome. There has been some limited discussion on the Galaxy mailing list about using RNA-seq tools with circular genomes, but the best resources are probably the tool documentation itself (e.g.

[galaxy-user] Cuffdiff result P and q values

2012-03-19 Thread Ateequr Rehman
Dear galaxy user After running cuffdiff on my two samples (SAM files from bowtie) i got a list with p and q values, and löast colum is saying abou significance with P value, it seems like the comparison should be significant, but in Q value is 1, and last coumn is saying not significant any one