Re: [galaxy-user] Download data using FTP-access?

2013-01-09 Thread Jennifer Hillman-Jackson

Hi Karen,

I don't run windows OS, but found this link that seems to describe the 
same situation with a solution. Maybe give it a try and see if it works?


http://stackoverflow.com/questions/3562095/using-curl-to-get-a-https-webpage-in-windows-7

This link also looked helpful, just from a set-up perspective and since 
your curl install is new, but I don't know if you are using a 64-bit 
machine or not:

https://support.gradesfirst.com/forums/20230492-how-to-setup-curl-on-windows-7-64-bit

I found these with a google using "curl windows 7 https" - there are 
other hits, but these two looked the most promising as a first go for 
troubleshooting.


Good luck!

Jen
Galaxy team

On 1/9/13 1:46 AM, Karen Margrethe Jessen wrote:

Hi Jennifer,

Thanks for your answer. I have downloaded the Curl program and I am trying to 
use it from commando promt in Windows 7. Hovewer, when typing the commando:

’C:\ curl https://xxx’

in commando promt, I get the following message:

’Protocol https not supported or disabled in libcurl’.

How do I make Curl download from https?

Karen



Fra: Jennifer Hillman-Jackson [j...@bx.psu.edu]
Sendt: 8. januar 2013 16:33
Til: Karen Margrethe Jessen
Cc: galaxy-user@lists.bx.psu.edu
Emne: Re: [galaxy-user] Download data using FTP-access?

Hello Karen,

  From a shell/unix/terminal window on your side,  use "curl" to download
datasets.

The link can be obtained by right clicking the floppy disk icon inside a
history item and choosing "Copy Link Address" (for most datasets) or
"Download Dataset/Download bam_index" (for BAM datasets there are two
downloads). Once you have the link:

 $ curl -O ''

Hopefully this helps!

Jen
Galaxy team


On 1/8/13 2:27 AM, Karen Margrethe Jessen wrote:

Is there any way of downloading processed files at galaxyproject.org by
e.g. FTP, instead of “Save as” in the web browser?  I have some large
(~50Gb) BAM files to download, and downloading it via the browser is not
stable.

Thanks, Karen.


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--
Jennifer Hillman-Jackson
Galaxy Support and Training
http://galaxyproject.org



--
Jennifer Hillman-Jackson
Galaxy Support and Training
http://galaxyproject.org
___
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Re: [galaxy-user] Download data using FTP-access?

2013-01-08 Thread Jennifer Hillman-Jackson

Hello Karen,

From a shell/unix/terminal window on your side,  use "curl" to download 
datasets.


The link can be obtained by right clicking the floppy disk icon inside a 
history item and choosing "Copy Link Address" (for most datasets) or 
"Download Dataset/Download bam_index" (for BAM datasets there are two 
downloads). Once you have the link:


   $ curl -O ''

Hopefully this helps!

Jen
Galaxy team


On 1/8/13 2:27 AM, Karen Margrethe Jessen wrote:

Is there any way of downloading processed files at galaxyproject.org by
e.g. FTP, instead of “Save as” in the web browser?  I have some large
(~50Gb) BAM files to download, and downloading it via the browser is not
stable.

Thanks, Karen.


___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

   http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

   http://lists.bx.psu.edu/



--
Jennifer Hillman-Jackson
Galaxy Support and Training
http://galaxyproject.org
___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

 http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

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[galaxy-user] Download data using FTP-access?

2013-01-08 Thread Karen Margrethe Jessen
Is there any way of downloading processed files at galaxyproject.org by e.g. 
FTP, instead of “Save as” in the web browser?  I have some large (~50Gb) BAM 
files to download, and downloading it via the browser is not stable.

Thanks, Karen.
___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/