Re: [galaxy-user] Errors during database migration after updating galaxy

2012-10-01 Thread Greg Von Kuster
Hello Joel, The main Galaxy tool shed is back up - thanks for reporting this problem. Greg Von Kuster On Sep 30, 2012, at 5:34 PM, Joel Rosenberg wrote: > It looks like the galaxy toolshed is down. > > The migration script is trying to download this: > > http://toolshed.g2.bx.psu.edu/reposito

Re: [galaxy-user] Errors during database migration after updating galaxy

2012-09-30 Thread Joel Rosenberg
It looks like the galaxy toolshed is down. The migration script is trying to download this: http://toolshed.g2.bx.psu.edu/repository/get_tool_dependencies?name=bwa_wrappers&owner=devteam&changeset_revision=ffa8aaa14f7c&webapp=install_manager But this: http://toolshed.g2.bx.psu.edu

[galaxy-user] Errors during database migration after updating galaxy

2012-09-30 Thread Joel Rosenberg
My cloud galaxy cluster can't boot up after attempting a bitbucket update due to a 502 HTTP error when trying to update the DB. Here's the log: /mnt/galaxyTools/galaxy-central/eggs/pysam-0.4.2_kanwei_b10f6e722e9a-py2.6-linux-x86_64-ucs4.egg/pysam/__init__.py:1: RuntimeWarning: __builtin_