Hello Irene,
Original MAF files come from UCSC at http://genome.ucsc.edu in the
downloads area. In your local, you can either use this in from your
history, or add it as a pre-cashed dataset to make it available to the
tool group " Fetch Alignments".
To make it simple, you can rsync our vers
I would like to be able to replicate what Galaxy does to find indels on
my own machine. However, I am facing the following challenges:
1. I want to find Indels in the 3-way multiz alignment of hg18,
panTro2, and rheMac2, but I cannot find the alignment anywhere. Where
can I get the alignmen
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