[galaxy-user] How do I import protein coding genes location from UCSC?

I have to import into Galaxy annotations of coding genes from the UCSC genome browser and then use the Operate on genomic intervals set of tools to remove transcripts that overlap with coding genes from my gtf file . How should I go about doing it?. Thanks, Himanshu

Re: [galaxy-user] How do I import protein coding genes location from UCSC?

Hi Himanshu, The first protocol of this paper has a section where protien coding exons are extracted from UCSC. This could be adjusted to include the entire genome (region = genome) and can be from any Gene and Gene Prediction Track you find appropriate (read track methods at UCSC to