Dear Jennifer,
thank you, I already checked the coverage with the GENCODE and found those
loci overlapping with the annotations. I also tried to overlap with the
tracks Small RNA-seq from ENCODE/Cold Spring Harbor Lab and ENCODE RNA-seq
Tracks a few of the loci not covered by GENCODE annotation.
Dear Sir/Madam,
I am new at Galaxy. I need to define if a set loci ( about 700) is
transcribed, i.e. these loci overlap with those reported in the Encode
RNA-seq data. The track contains several tables, can you please suggest me
how to proceed? do I need to download all the tables from UCSC table
Hi Marco,
Each RNA-seq study in the ENCODE project may have variable coverage, but
if the goal is to identify overlapping regions with gene annotations
targeted by the ENCODE project, the GENCODE Genes track is most likely
the one you are looking for.
Review the contents of the track at the
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