Hello,
*First option* is the tool SnpEff Variant effect and annotation. This
would require setting up a cloud instance and adding the appropriate
annotation to the tool for use with the genome you are working with. See
the tool shed for more about SnpEff, or the Main/Test server if you want
Dear galaxy-users,
I am working on a project to identify and genotype SNPs in targeted genes. I
did some analysis using Galaxy. First, mapping to the genome with Bowtie.
Second, identify SNPs using MPileup in SAMtools. When I got the pileup file,
the SNP information is in which chromosome and
2 matches
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