[galaxy-user] Illumina Methylation tool in toolshed

2013-07-29 Thread Sachit Adhikari
Hi,

This is my third post regarding this matter but however I didn't get any
reply. I am trying to find a tool for r Illumina Methylation. Is there any
available on the tool shed or test tool shed?

Thanks,

Sachit
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Re: [galaxy-user] Illumina Methylation tool in toolshed

2013-07-29 Thread Bjoern Gruening

Hi Sachit,

not in the toolshed but you can find a start here:

https://github.com/bgruening/galaxytools/tree/master/illumina_methylation_analyser

its for the 450k chips, I have also some tools for WGMA if
you are interested.

Cheers,
Bjoern

 Hi,
 
 This is my third post regarding this matter but however I
 didn't get any
 reply. I am trying to find a tool for r Illumina
 Methylation. Is there any
 available on the tool shed or test tool shed?
 
 Thanks,
 
 Sachit
___
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Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
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Re: [galaxy-user] Illumina Methylation tool in toolshed

2013-07-29 Thread Sachit Adhikari
Hi Bjoern,

Thank you for your reply.  To be precise I am looking for a wrapper of *
lumi. *http://www.bioconductor.org/packages/2.12/bioc/html/lumi.html

Do we have that in main tool shed or test tool shed or in github?

Thanks,

Sachit


On Mon, Jul 29, 2013 at 2:53 PM, Bjoern Gruening 
bjoern.gruen...@pharmazie.uni-freiburg.de wrote:


 Hi Sachit,

 not in the toolshed but you can find a start here:


 https://github.com/bgruening/galaxytools/tree/master/illumina_methylation_analyser

 its for the 450k chips, I have also some tools for WGMA if
 you are interested.

 Cheers,
 Bjoern

  Hi,
 
  This is my third post regarding this matter but however I
  didn't get any
  reply. I am trying to find a tool for r Illumina
  Methylation. Is there any
  available on the tool shed or test tool shed?
 
  Thanks,
 
  Sachit

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Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
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Re: [galaxy-user] Illumina Methylation tool in toolshed

2013-07-29 Thread Bjoern Gruening
Not that I know of, mine is wrapping IMA.

cheers,
Bjoern


 Hi Bjoern,
 
 Thank you for your reply.  To be precise I am looking for
 a wrapper of *
 lumi.

*http://www.bioconductor.org/packages/2.12/bioc/html/lumi.html
 
 Do we have that in main tool shed or test tool shed or in
 github?
 
 Thanks,
 
 Sachit
 
 
 On Mon, Jul 29, 2013 at 2:53 PM, Bjoern Gruening 
 bjoern.gruen...@pharmazie.uni-freiburg.de wrote:
 
 
  Hi Sachit,
 
  not in the toolshed but you can find a start here:
 
 
 

https://github.com/bgruening/galaxytools/tree/master/illumina_methylation_analyser
 
  its for the 450k chips, I have also some tools for WGMA
 if
  you are interested.
 
  Cheers,
  Bjoern
 
   Hi,
  
   This is my third post regarding this matter but
 however I
   didn't get any
   reply. I am trying to find a tool for r Illumina
   Methylation. Is there any
   available on the tool shed or test tool shed?
  
   Thanks,
  
   Sachit
 

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at usegalaxy.org.  Please keep all replies on the list by
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