John,
It is the number of reads that had this exact insertion, as you
guessed. Let us know if you have further questions.
Regards,
Kelly
On Mar 18, 2011, at 10:50 AM, John David Osborne wrote:
Hi,
I was running an indel analysis on galaxy and I got a file as output
that has rows that look like this:
fly2 98299830I ATACTCCAA 79
Can anybody tell me what the last column (79) means? There is
obviously an insertion at 9829 with those nucleotides, but I’m not
sure what the 79 refers to even after reading the linked
documentation. Is it the number of reads that had this? A quality
score?
-John
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