Re: [galaxy-user] Join on genomic interval

2011-08-08 Thread Jennifer Jackson
Hello Seth, It sounds like there may be also reads joining with more than one exon - so there is a many-to-many relationship in the output. This would not be uncommon (especially if there are multiple reads per gene cluster) and would result in an input read being reported >1 time in the outpu

[galaxy-user] Join on genomic interval

2011-08-06 Thread Seth Kasowitz
Hello, I am hoping for some clarification on how Join on Genomic Intervals functions. I have two lists of intervals: mapped reads and a list of exons. If I join the two (INNER JOIN), I expect multiple reads to join with the same exon, and see this in the output. What is confusing me is that some ou