Re: [galaxy-user] LASTZ arguments in "Full parameter list"-mode

2011-06-07 Thread Appelt, Uwe
Gesendet: Montag, 6. Juni 2011 18:06 An: Appelt, Uwe Cc: galaxy-user@lists.bx.psu.edu Betreff: Re: [galaxy-user] LASTZ arguments in "Full parameter list"-mode Howdy, Uwe, (I don't speak for the galaxy group, but I watch the list for lastz- related messages.) > Is it pos

Re: [galaxy-user] LASTZ arguments in "Full parameter list"-mode

2011-06-06 Thread Bob Harris
Howdy, Uwe, (I don't speak for the galaxy group, but I watch the list for lastz- related messages.) Is it possible to specify more arguments in "Full parameter list"- mode, particularly those that're implicitely described in YASRA-mode (match/mismatch rewards and step-size (Z/step))? As y

[galaxy-user] LASTZ arguments in "Full parameter list"-mode

2011-06-06 Thread Appelt, Uwe
Hi @All, short version: Is it possible to specify more arguments in "Full parameter list"-mode, particularly those that're implicitely described in YASRA-mode (match/mismatch rewards and step-size (Z/step))? long version: I'm dealing with 454 reads and it's crucial to the scenario to have the 5