Hi Keith,
This does sound like a BED file format issue if that is your input type.
A BED6 is necessary to capture strand. BED is different from Interval in
that all columns are required to be in a specific order. In addition,
all prior columns are required for later columns to be identified
c
To be more specific, I continually get error's that say, NO records for
chromosome X (or any other), minus strand!
I just don't understand what the problem is here, because there are millions
of tags on each strand. Could it be that the "-" characters is not
recognized by the MACS program so its
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